Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0916 ATGTTACTTTTTCATGGCTCCCCTACAAATAAACATTTTCACAGAAAGAACAAATTTTCAGAGCAGATTTTCGGTCCAAGAATGGAGACTTTGGTTAAGCAGATAAAGCCTGTGAGGGAGAGAGATTCCGGGCCAGGACGTGAGAATATAGGAGATCCTACCGGCAGGAGGGACAAAAGATTACCGTCCCCAAAAGAACAATCTTTCAAAGAGAAGAAGAAATCACAGAGTTGGTTGAGAAGACAATTTTTTAGGGAAGTAAGTGAAGATCAGAAGGTCATCGACCACGAAACAGCAATGGCAGCTGCTGTATTTGCTGTTCACTCAAAAGAAGAAAACATTCGTGTCCCCAACCAGGATAAGAAGAAGACAACAGAGGATCCTGGAAAAACCTCCGTAAAAGAGATCAGTATCGAAAAGGAACTAGATATTACAACTCCGGTTTCAAAACTCGGTAGAGTTTCAAAACGATTCGCAGATTTATTGAGAAGCACGGAAGGGGGAACAGACGATGAGATAGTGGTTACTGCAGTTGGATACGGTGGAGAGGGGCCGGAAGAAACAGGAGGTGGTTCTGCTTCAGCCTCTTCAACGAAGAAGACTCCAACTTTTACAGATAAGAAAGTAGAAAGCTCCATCCAGAAAGCACCTGTAAATGCAGCTCCAAAACCTGCAACTTTTCCGGCTGAAACCAAAATGCAGGATTCAAAAACAACAAGAGCTGTAGGTGTTAGAGATGGAGATATAGATGCTTGGGAAGAGGCTCAATTGGAGAAGATTAAAACAAAGTATAGTAAACAAAATGCTGAAATCCTCACATGGGAGAACGACAAGAAGGTAAATGTCTGGTGCAAACTGGATCAGAAAAAGGATAAGCTGGGAAAGAAGATGGAGAAGGCCATGATGGGGTTTAAGAAAGATAGGGATCGTATAAACCAGATAGCAAAAGAAGCAAGAGCAAAGGTAGACAAAAGTCACAGAAAAGAGGTTGATAAGGTGAAACAGAAGGCAGATGTAATGAGAAAAACAAGAAAAGTCCCTGTAACCTGTTTCTGCTTCTGA 1062 41.9 MLLFHGSPTNKHFHRKNKFSEQIFGPRMETLVKQIKPVRERDSGPGRENIGDPTGRRDKRLPSPKEQSFKEKKKSQSWLRRQFFREVSEDQKVIDHETAMAAAVFAVHSKEENIRVPNQDKKKTTEDPGKTSVKEISIEKELDITTPVSKLGRVSKRFADLLRSTEGGTDDEIVVTAVGYGGEGPEETGGGSASASSTKKTPTFTDKKVESSIQKAPVNAAPKPATFPAETKMQDSKTTRAVGVRDGDIDAWEEAQLEKIKTKYSKQNAEILTWENDKKVNVWCKLDQKKDKLGKKMEKAMMGFKKDRDRINQIAKEARAKVDKSHRKEVDKVKQKADVMRKTRKVPVTCFCF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7094997 7096794 + Conep19aG0094200.1 Cone19ag0916 459353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0916 353 Coils Coil 257 277 - -
Cone19ag0916 353 MobiDBLite consensus disorder prediction 181 242 - -
Cone19ag0916 353 MobiDBLite consensus disorder prediction 32 76 - -
Cone19ag0916 353 MobiDBLite consensus disorder prediction 190 212 - -
Cone19ag0916 353 PANTHER OS02G0116800 PROTEIN 66 352 - -
Cone19ag0916 353 MobiDBLite consensus disorder prediction 33 76 - -
Cone19ag0916 353 Pfam Remorin, C-terminal region 248 348 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0916 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0918 Cone-Chr13:8038938 Cone19ag0916 Cone-Chr19:7094997 1.80E-99 wgd
Cone19ag0916 Cone-Chr19:7094997 Cone6ag0545 Cone-Chr6:2687980 2.03E-14 wgd
Cone19ag0916 Cone-Chr19:7094997 Cone9ag0555 Cone-Chr9:2635339 2.29E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g71 . . Bda01g02133 . . . . . . . . . . Car18g01030 . Cpe09g00209 . . . . . . . . . . . . . . . . Cone19ag0916 . Cone9ag0555 . . . . . . . . . Bpe02g02322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009173 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 2 1 34