Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0918 ATGACCCTCTACATGCCCTTGTTCAGAATCAGCACCACCATGAAAACCTTAACTCAGCTCCATGCCCACCTCTTCGTCACCGGCTTCCATAGAGACCCACTCCCTTCCACAAAGCTCATCGAATCCTATGCCCAATTAAACTCCCTCAAATCTTCCCGATCAGTCTTCCATACCTTCCCTTCTCCCGATTCTTTCATGTGGGGCGTTCTGATCAAATCTTACGTCTGGAACCACATCTTCCACGAAGCAATTTCACTCTTCCATCAAATGCTTCATAGTCAAGTTCAACTCAATAAGTTCATTTTCCCGTCGATTCTAAGAGCTTGTTCTGGTTTTAATGATCTAGGCATTGGGGAAAAGATACATGGAATGATAATTAAAGCTGGGTTTGATGATGATTCTATAGTGGAAACCTCCTTGCTTAGTATGTATGGTGAATTAGGTTATTTACATAATGCATGGAAGGTGTTTGATGAAATGCGTGGAAGAGATGTGATTTCTTGGAGTTCGATTATTTCCTGTCTTGTTGAGAATGAAGATCTAATTGAAGGCTTAGAGATCTTCCGTTTGATGCTTTCTGAAGGGATTGAGCCGGATTCAGTTGTGATGCTTAGCATGGCAGATGCTTGTGGTGAATCGGGTTCACTGAATTTAGCGAGATCAATTCATGGATATGTCTTGAGAAAGAGAATCGAAAATGATGAATCATTGAGCAATTCATTGATAGTAATGTATACTAGGTGTGGTGAAGTGCATAGTGCAGAGAAAGTTTTCGAGAACTTTAATTGTCGAAGAAATACCGCTTCTTGGACTTCTATGATATCTTGCTACAATCAAGCTGGTTCTTTTCAGAAAGCAATAGATGTTTTCATTGCAATGCAAGAGTCGGAAGTTGAACCCAATTCAGTAACCTTGATGAGTATTTTGTCATCCTGTGCTCGGTTAGGTTTGCTCAAAGAAGGGAAATCAGTTCATTGTTTTGTGATAAGAGCTGATATTGATCCAGGATATGAGTTTCTAGGACCGGTTTTACTTTCGTTATATGCTAACTCTGTGGATCAAGGTGTTTGTGAGAAGATTCTTGGTTTGATAGAGAAGAGAGATGTTATAACATGGAATATGATGATTTCGATTAATGTTCAGAAGGGTCTGTTAAAAGATGCATTACTGACCTTTGCACATATGCAGAACAGAGGATTAATGCCTGATTCATTTGGTCTAGCCAGTTCTCTATCAGCTTCTGGAAATGTTGGGCAAATAGAGCTCGGGCAGCAAATTCATGCTCATATCATAAAGAGAAGATATATTGATGAATATGTTCAGAATTCACTAATAGACATGTATTCTAAATGTGGTTTTGTGAATCTAGCATACATGATATTTAAGAACATAGAATCAAAAAGCATAGTTACATGGAATTCTATGTTGTCAGGATTTTCTCAGAATGGTAATTCAGTTGAAGCGGTTGGCTTATTTGACAAAATGTATTCAAACCAGCTCGAGATGAATGAAGTTACCTTCTTGAGTGTGATTCAAGCTTGCTCTTCTTTAGGATATCTTGAGAAGGGGAAATGGGTTCACCATAAACTCATTATAAATGGTGTAAGAGAAGATCTTTATATTGAAACGGCTCTTACCGACATGTATGCTAAATGCGGAGATCTCCGAACTGCACAGTCTGTTTTTGATATCATGTCAGAAAGAAGTGTGGTATCATGGACTACAATGATTGCTAGTTACGGGGTCCACGGTAAGATTGATGATGTCATCTCACTCTTTGATCAGATGCTAAAATCCGGGATTAAACCAAATGATGTTACCTTCATGAATGTTATTTCAGCTTGTAGTCATGCTGGGTTGGTCAAAGAAGGGAAGTTGTATTTCAATTCCATGAGACAATTTGGGATTGAACCCAAAACAGAGCATTTTGCATGTATGGTAGATCTTCTTAGTCGTTCTGGTGATCTTAGTGGAGCATACGAAATCATCAAATCAATGATGTCATCACCTCTTGATGCTAGCATTTGGGGCACTTTGCTAAATGGGTGTCGGATTCATCAAAGAATGGATATTATTAAGAGGATTGAAAAGGACATATTTAGTAAGAAAACTGATGATACAGGGTACTATACATTATTGTCAAATATATATGCAGAAGGAGGAGAGTGGCTTGAATTTAGAAAGGTTAGGTCAATAATGAAAGGTACGGGTCTGAAGAAGGTGCCAGGATATAGCACAATAGAGCTTCATAAACGGGTTTATAGATTTGGAGCTGGAGATACTTGTCATTCAGAAACAGAGCAAATCAATAGAGTTTTAGAATCTTTTCAGAATTTAGCTCAGGAAGATTGTTCCTAA 2358 38.38 MTLYMPLFRISTTMKTLTQLHAHLFVTGFHRDPLPSTKLIESYAQLNSLKSSRSVFHTFPSPDSFMWGVLIKSYVWNHIFHEAISLFHQMLHSQVQLNKFIFPSILRACSGFNDLGIGEKIHGMIIKAGFDDDSIVETSLLSMYGELGYLHNAWKVFDEMRGRDVISWSSIISCLVENEDLIEGLEIFRLMLSEGIEPDSVVMLSMADACGESGSLNLARSIHGYVLRKRIENDESLSNSLIVMYTRCGEVHSAEKVFENFNCRRNTASWTSMISCYNQAGSFQKAIDVFIAMQESEVEPNSVTLMSILSSCARLGLLKEGKSVHCFVIRADIDPGYEFLGPVLLSLYANSVDQGVCEKILGLIEKRDVITWNMMISINVQKGLLKDALLTFAHMQNRGLMPDSFGLASSLSASGNVGQIELGQQIHAHIIKRRYIDEYVQNSLIDMYSKCGFVNLAYMIFKNIESKSIVTWNSMLSGFSQNGNSVEAVGLFDKMYSNQLEMNEVTFLSVIQACSSLGYLEKGKWVHHKLIINGVREDLYIETALTDMYAKCGDLRTAQSVFDIMSERSVVSWTTMIASYGVHGKIDDVISLFDQMLKSGIKPNDVTFMNVISACSHAGLVKEGKLYFNSMRQFGIEPKTEHFACMVDLLSRSGDLSGAYEIIKSMMSSPLDASIWGTLLNGCRIHQRMDIIKRIEKDIFSKKTDDTGYYTLLSNIYAEGGEWLEFRKVRSIMKGTGLKKVPGYSTIELHKRVYRFGAGDTCHSETEQINRVLESFQNLAQEDCS 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7103230 7105587 + Conep19aG0094500.1 Cone19ag0918 459355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 543 756 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 10 111 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 218 331 - -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein 73 217 - -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 113 215 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 370 400 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 645 669 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 239 259 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 65 93 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 138 164 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 166 196 IPR002885 -
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 413 536 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 216 338 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Pfam PPR repeat family 468 515 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat family 266 314 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat family 569 616 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 571 604 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 166 200 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 606 638 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 269 301 IPR002885 -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 540 766 - -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein 422 524 - -
Cone19ag0918 785 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 293 404 - -
Cone19ag0918 785 Pfam E motif 705 748 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0918 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0918 Cone-Chr19:7103230 Cone6ag1117 Cone-Chr6:7116784 1.30E-152 dispersed
Cone19ag0918 Cone-Chr19:7103230 Cone19ag0919 Cone-Chr19:7105597 2.77E-111 tandem
Cone13ag0924 Cone-Chr13:8049463 Cone19ag0918 Cone-Chr19:7103230 5.87E-151 transposed
Cone1ag1709 Cone-Chr1:57997454 Cone19ag0918 Cone-Chr19:7103230 3.30E-149 transposed
Cone13ag0923 Cone-Chr13:8048299 Cone19ag0918 Cone-Chr19:7103230 2.51E-134 wgd
Cone13ag0072 Cone-Chr13:439937 Cone19ag0918 Cone-Chr19:7103230 1.66E-113 wgd
Cone16ag0192 Cone-Chr16:1252437 Cone19ag0918 Cone-Chr19:7103230 1.50E-38 wgd
Cone19ag0918 Cone-Chr19:7103230 Cone7ag0484 Cone-Chr7:2223057 2.31E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g77 Blo01g00445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0918 . . . . . . . . . . . Bpe02g02324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012959 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 1 0 1 0 1 0 1 1 1 26