Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0919 ATGCTAAAACGATTCGTCGTCCTGCGTCGAAGCTCTGCTCCGATGACAGGAACTTCGCTTCGATGGCGGAGGACTACGACCTCAAACGCAGGGTACGTATCATATCTCGAACAAACAGAGCTTGCTCAAACTATGCCTTCCATGCATTCCGTCTCTTCAAGTCCATGCTTCCACCTTCTCAATCTCTGCAGAAACATCAGCTCCCTCAAGCAGATCCACGCCTTACTAATCACCCATGCCTTGGTTGGCGATCTCTTATGTGACACTAAACTGATCAGCGTATACGGTTCACTAGGGTTCCCCAAGCATGCCCGCCAAGTGTTCGATCAGATGCACCACAGAGATCATTATTCATTTAAGGTGATGATCAGGTGGTACTTCTTAAACGATTTGTACTCTGAGATCATTCCGTTTTATGCCCGTTTGAGAGTATGCTTCAAAGAGTGGGACAATCCCGTCTTTTCGATTCTTCTCAAGGCTTGTAGCGAATTACGTGACATTAATGGAGGCAAGAAGGTCCATTGTGAAACGGTGAAAGTGGGTGGTTTGGATAGTTTTGTGCAAACGGGTTTGGTCGATGTGTATGCAAAATGTGGGGAGATTGAGTGTGCAAGGAAAATGTTCGATGAAATGCCTGAGAGAAATGTGGTTTCTTGGAGTTCATTGATTTCCGGGTATGTTCAAAATGATTGCATGGAAGAGGGTTTGATTTCGTTTAATAGAATGAGGGAAGGGTTGGTTGAAGGGAATCAATATACTTTAGGGAGCTTAGTCCTAGCTTGTGCAAAATTAGGAGCTTTGCATCAAGGGAAAGGGATTCATGGCTATGTGATTAAGAATGGTTTTGAATCTCATTCAGTTTTGGTGACGGCTCTTCTCGATATGTATGTCAAGTGTGGGAATATTCTAGATGCTCGTTCGGTATTTGATGAGCTTTTTGCCATTGACCTAGTTTCATGGACAGCTATGATTGTTGGGTATACTCAATTTGGATACCCAAATGAGGCTTTAAGGTTGTTCACTGATGAAAGTATTTTGCCTAATTCTATAACAATTTCTAGTGTTCTTTCATCATGTGCACAATTAGGTAGTCTAAAATTTGGGAAGGTTGTTCATGGGCTTGGGATTAAACTTGGGTTGGATGAGATATCAGTTGTGAGTAATGCTCTCATGGATATGTATGCTAAATGTCGTGAAATCAATGATGCTCATTTTATTTTCGAAACAGCCTTGGACAGGGATGTGATTACTTGGAACACAATTATTTCTGGGTATTCTCAAAACGGGTGTTCATATGATGCCCTAAAACTCTTCAACGAGATGAGATCAAATTCATTCAAATCCGATGCAGTTACACTGGTGAGTGTTCTGGCAGCATCAGCCTTGCTTGGTGCTCTTCAAATTGGTTCATCTCTTCATGCGTGTTCTATAAAGGAAGGCATATTATCATCTCATCTCTATGTTGGGACTGCCCTTTTGAACTTCTATGCAAAATGTGGTGATTCCAAGTCGGCCCGGAAAGTGTTTGACGGAATGGGAGAGAAGAACATTGTGACGTGGAGTGCAATGATTGGTGGGTACGGAATGCAAGGTGATGATAGTGAATCATTTGCCATTTTTGACGATATGTTGAAGGAAGAATTGAGACCCAATGAAGTAATCTTCACCACGATATTGTCGGCTTGTAGCCATACTGGAATGGTGGAGGAAGGGTGGAGGTATTTCATGTCCATGTGTCAAGATTACAACTTTACCCCTACCATGAAACATTATGCTTGTATGGTTGATCTTCTAGCTCGAGCCGGAAGGCTTGACGAAGCTCTTTGCTTCATCGAGAAAATTCCGGTTAGACCGGATTTTAGTTTGTTCGGTGCTTTCCTTCATGGGTGTGGATTGTATTCAAGATTTGATCTTGGAGAAGTAGCAATCAGAAGAATGCTTGAGCTGCATCCTAATGAAGCTTGCTACTATGTGCTCATGTCTAATTTATATGCTTCGGATGGAAGGTGGGGCCAGGTTGATCAGATCAGAGAGATGATGAAGCAAACCGGATTGAATAAATCCCCTGGTTGTAGCCTAGTAGAAACAGATTTTATGAGGAATGAATTCCAGGTTAGAGTTGTCAATGTCTTAGTATAA 2139 42.26 MLKRFVVLRRSSAPMTGTSLRWRRTTTSNAGYVSYLEQTELAQTMPSMHSVSSSPCFHLLNLCRNISSLKQIHALLITHALVGDLLCDTKLISVYGSLGFPKHARQVFDQMHHRDHYSFKVMIRWYFLNDLYSEIIPFYARLRVCFKEWDNPVFSILLKACSELRDINGGKKVHCETVKVGGLDSFVQTGLVDVYAKCGEIECARKMFDEMPERNVVSWSSLISGYVQNDCMEEGLISFNRMREGLVEGNQYTLGSLVLACAKLGALHQGKGIHGYVIKNGFESHSVLVTALLDMYVKCGNILDARSVFDELFAIDLVSWTAMIVGYTQFGYPNEALRLFTDESILPNSITISSVLSSCAQLGSLKFGKVVHGLGIKLGLDEISVVSNALMDMYAKCREINDAHFIFETALDRDVITWNTIISGYSQNGCSYDALKLFNEMRSNSFKSDAVTLVSVLAASALLGALQIGSSLHACSIKEGILSSHLYVGTALLNFYAKCGDSKSARKVFDGMGEKNIVTWSAMIGGYGMQGDDSESFAIFDDMLKEELRPNEVIFTTILSACSHTGMVEEGWRYFMSMCQDYNFTPTMKHYACMVDLLARAGRLDEALCFIEKIPVRPDFSLFGAFLHGCGLYSRFDLGEVAIRRMLELHPNEACYYVLMSNLYASDGRWGQVDQIREMMKQTGLNKSPGCSLVETDFMRNEFQVRVVNVLV 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7105597 7107818 - Conep19aG0094600.1 Cone19ag0919 459356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 270 366 - -
Cone19ag0919 712 Pfam PPR repeat 318 340 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 217 244 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 591 613 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 289 312 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 190 216 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 91 114 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat family 413 457 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat family 515 562 IPR002885 -
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 178 271 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 273 371 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 377 467 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 367 479 - -
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 39 177 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 469 709 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 586 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 518 552 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 189 217 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 553 587 IPR002885 -
Cone19ag0919 712 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 118 226 IPR050421 -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 490 699 - -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein 126 269 - -
Cone19ag0919 712 Pfam E motif 633 695 IPR046848 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0926 Cone-Chr13:8050764 Cone19ag0919 Cone-Chr19:7105597 1.12E-113 dispersed
Cone15ag0452 Cone-Chr15:2109310 Cone19ag0919 Cone-Chr19:7105597 6.86E-24 dispersed
Cone19ag0919 Cone-Chr19:7105597 Cone1ag1473 Cone-Chr1:57034802 4.48E-135 dispersed
Cone19ag0918 Cone-Chr19:7103230 Cone19ag0919 Cone-Chr19:7105597 2.77E-111 tandem
Cone13ag0925 Cone-Chr13:8050270 Cone19ag0919 Cone-Chr19:7105597 1.13E-48 wgd
Cone19ag0919 Cone-Chr19:7105597 Cone7ag0491 Cone-Chr7:2264686 2.84E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0919 - - - 0.0