Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0919 ATGCTAAAACGATTCGTCGTCCTGCGTCGAAGCTCTGCTCCGATGACAGGAACTTCGCTTCGATGGCGGAGGACTACGACCTCAAACGCAGGGTACGTATCATATCTCGAACAAACAGAGCTTGCTCAAACTATGCCTTCCATGCATTCCGTCTCTTCAAGTCCATGCTTCCACCTTCTCAATCTCTGCAGAAACATCAGCTCCCTCAAGCAGATCCACGCCTTACTAATCACCCATGCCTTGGTTGGCGATCTCTTATGTGACACTAAACTGATCAGCGTATACGGTTCACTAGGGTTCCCCAAGCATGCCCGCCAAGTGTTCGATCAGATGCACCACAGAGATCATTATTCATTTAAGGTGATGATCAGGTGGTACTTCTTAAACGATTTGTACTCTGAGATCATTCCGTTTTATGCCCGTTTGAGAGTATGCTTCAAAGAGTGGGACAATCCCGTCTTTTCGATTCTTCTCAAGGCTTGTAGCGAATTACGTGACATTAATGGAGGCAAGAAGGTCCATTGTGAAACGGTGAAAGTGGGTGGTTTGGATAGTTTTGTGCAAACGGGTTTGGTCGATGTGTATGCAAAATGTGGGGAGATTGAGTGTGCAAGGAAAATGTTCGATGAAATGCCTGAGAGAAATGTGGTTTCTTGGAGTTCATTGATTTCCGGGTATGTTCAAAATGATTGCATGGAAGAGGGTTTGATTTCGTTTAATAGAATGAGGGAAGGGTTGGTTGAAGGGAATCAATATACTTTAGGGAGCTTAGTCCTAGCTTGTGCAAAATTAGGAGCTTTGCATCAAGGGAAAGGGATTCATGGCTATGTGATTAAGAATGGTTTTGAATCTCATTCAGTTTTGGTGACGGCTCTTCTCGATATGTATGTCAAGTGTGGGAATATTCTAGATGCTCGTTCGGTATTTGATGAGCTTTTTGCCATTGACCTAGTTTCATGGACAGCTATGATTGTTGGGTATACTCAATTTGGATACCCAAATGAGGCTTTAAGGTTGTTCACTGATGAAAGTATTTTGCCTAATTCTATAACAATTTCTAGTGTTCTTTCATCATGTGCACAATTAGGTAGTCTAAAATTTGGGAAGGTTGTTCATGGGCTTGGGATTAAACTTGGGTTGGATGAGATATCAGTTGTGAGTAATGCTCTCATGGATATGTATGCTAAATGTCGTGAAATCAATGATGCTCATTTTATTTTCGAAACAGCCTTGGACAGGGATGTGATTACTTGGAACACAATTATTTCTGGGTATTCTCAAAACGGGTGTTCATATGATGCCCTAAAACTCTTCAACGAGATGAGATCAAATTCATTCAAATCCGATGCAGTTACACTGGTGAGTGTTCTGGCAGCATCAGCCTTGCTTGGTGCTCTTCAAATTGGTTCATCTCTTCATGCGTGTTCTATAAAGGAAGGCATATTATCATCTCATCTCTATGTTGGGACTGCCCTTTTGAACTTCTATGCAAAATGTGGTGATTCCAAGTCGGCCCGGAAAGTGTTTGACGGAATGGGAGAGAAGAACATTGTGACGTGGAGTGCAATGATTGGTGGGTACGGAATGCAAGGTGATGATAGTGAATCATTTGCCATTTTTGACGATATGTTGAAGGAAGAATTGAGACCCAATGAAGTAATCTTCACCACGATATTGTCGGCTTGTAGCCATACTGGAATGGTGGAGGAAGGGTGGAGGTATTTCATGTCCATGTGTCAAGATTACAACTTTACCCCTACCATGAAACATTATGCTTGTATGGTTGATCTTCTAGCTCGAGCCGGAAGGCTTGACGAAGCTCTTTGCTTCATCGAGAAAATTCCGGTTAGACCGGATTTTAGTTTGTTCGGTGCTTTCCTTCATGGGTGTGGATTGTATTCAAGATTTGATCTTGGAGAAGTAGCAATCAGAAGAATGCTTGAGCTGCATCCTAATGAAGCTTGCTACTATGTGCTCATGTCTAATTTATATGCTTCGGATGGAAGGTGGGGCCAGGTTGATCAGATCAGAGAGATGATGAAGCAAACCGGATTGAATAAATCCCCTGGTTGTAGCCTAGTAGAAACAGATTTTATGAGGAATGAATTCCAGGTTAGAGTTGTCAATGTCTTAGTATAA 2139 42.26 MLKRFVVLRRSSAPMTGTSLRWRRTTTSNAGYVSYLEQTELAQTMPSMHSVSSSPCFHLLNLCRNISSLKQIHALLITHALVGDLLCDTKLISVYGSLGFPKHARQVFDQMHHRDHYSFKVMIRWYFLNDLYSEIIPFYARLRVCFKEWDNPVFSILLKACSELRDINGGKKVHCETVKVGGLDSFVQTGLVDVYAKCGEIECARKMFDEMPERNVVSWSSLISGYVQNDCMEEGLISFNRMREGLVEGNQYTLGSLVLACAKLGALHQGKGIHGYVIKNGFESHSVLVTALLDMYVKCGNILDARSVFDELFAIDLVSWTAMIVGYTQFGYPNEALRLFTDESILPNSITISSVLSSCAQLGSLKFGKVVHGLGIKLGLDEISVVSNALMDMYAKCREINDAHFIFETALDRDVITWNTIISGYSQNGCSYDALKLFNEMRSNSFKSDAVTLVSVLAASALLGALQIGSSLHACSIKEGILSSHLYVGTALLNFYAKCGDSKSARKVFDGMGEKNIVTWSAMIGGYGMQGDDSESFAIFDDMLKEELRPNEVIFTTILSACSHTGMVEEGWRYFMSMCQDYNFTPTMKHYACMVDLLARAGRLDEALCFIEKIPVRPDFSLFGAFLHGCGLYSRFDLGEVAIRRMLELHPNEACYYVLMSNLYASDGRWGQVDQIREMMKQTGLNKSPGCSLVETDFMRNEFQVRVVNVLV 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7105597 7107818 - Conep19aG0094600.1 Cone19ag0919 459356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 270 366 - -
Cone19ag0919 712 Pfam PPR repeat 318 340 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 217 244 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 591 613 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 289 312 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 190 216 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat 91 114 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat family 413 457 IPR002885 -
Cone19ag0919 712 Pfam PPR repeat family 515 562 IPR002885 -
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 178 271 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 273 371 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 377 467 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 367 479 - -
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 39 177 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 Gene3D Tetratricopeptide repeat domain 469 709 IPR011990 GO:0005515(InterPro)
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Cone19ag0919 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 586 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 518 552 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 189 217 IPR002885 -
Cone19ag0919 712 NCBIfam pentatricopeptide repeat 553 587 IPR002885 -
Cone19ag0919 712 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 118 226 IPR050421 -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 490 699 - -
Cone19ag0919 712 FunFam Pentatricopeptide repeat-containing protein 126 269 - -
Cone19ag0919 712 Pfam E motif 633 695 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0919 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0926 Cone-Chr13:8050764 Cone19ag0919 Cone-Chr19:7105597 1.12E-113 dispersed
Cone15ag0452 Cone-Chr15:2109310 Cone19ag0919 Cone-Chr19:7105597 6.86E-24 dispersed
Cone19ag0919 Cone-Chr19:7105597 Cone1ag1473 Cone-Chr1:57034802 4.48E-135 dispersed
Cone19ag0918 Cone-Chr19:7103230 Cone19ag0919 Cone-Chr19:7105597 2.77E-111 tandem
Cone13ag0925 Cone-Chr13:8050270 Cone19ag0919 Cone-Chr19:7105597 1.13E-48 wgd
Cone19ag0919 Cone-Chr19:7105597 Cone7ag0491 Cone-Chr7:2264686 2.84E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g79 . . . . . Bpe10g00892 . Bma15g00138 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0919 . . . . . . Blo06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010395 1 1 1 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 29