Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0922 ATGTCGGACGAAGAGCACCACTTCGAGTCGAAGGCCGACGCCGGGGCTTCCAAAACCTACCCTCAGCAGGCTGGAACTATCCGTAAGAACGGTTACATTGTCATCAAGAACAGGCCTTGCAAGATCATGCTGGATTTAATGTTGTTAAGGTCTCAACCTCCAAGACAGGAAAGCACGGTCATGCTAAATGTCACTAAATGTCACTTTGTTGGTATCGACATCTTGACTGCCAAAAAGCTTGAAGATATTGTCCCTTCGTCCCATAACTGTGATGTTCCCCATGTCAACCGTACCGACTACCAACTGATCAATATCTCTGAGGATGGATTTGTTCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGGTCGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATTTGCGCTCTCAAGGACAGAGGCCCCAAGTAA 438 47.95 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKIMLDLMLLRSQPPRQESTVMLNVTKCHFVGIDILTAKKLEDIVPSSHNCDVPHVNRTDYQLINISEDGFVQIKDGFAEGKDLVVSVMSAMGEEQICALKDRGPK 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7121433 7122952 + Conep19aG0095000.1 Cone19ag0922 459359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0922 145 MobiDBLite consensus disorder prediction 1 21 - -
Cone19ag0922 145 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 112 140 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone19ag0922 145 PIRSF Transl_init_eIF5A 1 114 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone19ag0922 145 PIRSF Transl_init_eIF5A 110 143 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone19ag0922 145 SUPERFAMILY Translation proteins SH3-like domain 15 102 IPR008991 -
Cone19ag0922 145 Gene3D - 1 94 IPR014722 -
Cone19ag0922 145 SUPERFAMILY Nucleic acid-binding proteins 95 141 IPR012340 -
Cone19ag0922 145 SMART eIF_5a_2 94 140 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone19ag0922 145 Pfam Translation initiation factor 5A-like, N-terminal 17 43 IPR048670 -
Cone19ag0922 145 Pfam Translation initiation factor 5A-like, N-terminal 65 88 IPR048670 -
Cone19ag0922 145 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 112 142 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone19ag0922 145 Gene3D - 110 143 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0922 Cone-Chr19:7121433 Cone20ag0323 Cone-Chr20:1432030 6.03E-73 dispersed
Cone13ag0928 Cone-Chr13:8066860 Cone19ag0922 Cone-Chr19:7121433 1.29E-72 wgd
Cone16ag0191 Cone-Chr16:1246812 Cone19ag0922 Cone-Chr19:7121433 4.95E-68 wgd
Cone19ag0922 Cone-Chr19:7121433 Cone2ag0825 Cone-Chr2:34254365 1.57E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0922 K03263 - mdm:103423800 219.164