Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0927 ATGAGCTCTGAGAATTCAGAAAGCGGCGGTGATTCGTCGGCGCTGGGACCGGCGGCAGGTGGTAGTAAGGGAAGCTCGACCGGAACGTCAGGGACGACGGAGAAGAGTAAGGAGAAATCCAGAGTTAGCAGAACGTCGTTGATTCTGTGGCATGCTCATCAAAATGATGCCTCAGCGGTTCGTAAGTTGCTGGAGGAGGATGCATCGCTCGTCCATGCCAGAGACTACGATAATCGTACTCCTCTCCATGTCGCCTCCCTCCATGGCTGGATCGACGTCGCTAAAGTCTTGCTTGAGCACGGTGCTGATGTCAACGCCCAAGATCGTTGGAAGAACACTCCCCTAGCTGATGCAGAGGGTGCTAAAAAGCTAGCCATGATTGCACTGCTAAAATCTGGCGGTGGACTGTCTTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCACCACCACTGTCGAACAAATGTGACTGGGAGATTGACCCTTTGGAGCTGGACTTTTCGAACTCAAACCTTATTGGCAAGGGATCCTTTGGTGAGATATTAAAAGTGGGCTGGCGTGGAACACCTGTAGCTGTAAAACGAATTCTTCCGTCACTGTCAGATGATCGATTGGTGATTCAGGACTTTAGGCATGAGGTTAATTTGCTAGTGAAGCTTCGCCACCCAAATATAGTCCAATTTCTTGGAGCTGTCACCGAGAAAAGGCCCCTTATGTTGATTACCGAGTACTTACGAGGGGGTGATCTTCATCAGTACCTCAAGGAAAAAGGATCTCTTAATCCTTCCCAAGCTATCAGTTTTGCATTGGACATTGCCAGAGGCATGGCTTATCTTCACAATGAGCCAAATGTTATAATTCACCGAGATCTAAAACCAAGGAATGTACTCTTAGTGAATTCCAACGCCGACCATTTAAAGGTTGGAGATTTTGGACTCAGTAAGCTCATCAAGGTTCAAAATTGTCAGGATGTTTACAAATTGACTGGCGAGACTGGAAGTTACCGGTACATGGCTCCTGAAGTTTTCAAGCACAGGAAATATGACAAGAAGGTTGATGTGTTTTCTTTTGCAATGATTCTATACGAGATGCTTGAAGGGGATCCACCGCTTGCAAATTACGAGCCTTATGAAGCAGCGAAATATGTCGCAGAAGGACATAGACCTATCTTCCGTGCAAAAGGATACACCGTCGAGCTAAAGGAGTTAACAGAGCAGTGTTGGTCTGCAGACACGAACAAGAGACCGCATTTCTTGGAAATTCTCAAGAAACTTGAAAAGATCAAGGAAAATCTGCCAACAGATCATCACTGGAACATATTCAATGCATGA 1338 46.34 MSSENSESGGDSSALGPAAGGSKGSSTGTSGTTEKSKEKSRVSRTSLILWHAHQNDASAVRKLLEEDASLVHARDYDNRTPLHVASLHGWIDVAKVLLEHGADVNAQDRWKNTPLADAEGAKKLAMIALLKSGGGLSYGQNGSHFEPKPVPPPLSNKCDWEIDPLELDFSNSNLIGKGSFGEILKVGWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKRPLMLITEYLRGGDLHQYLKEKGSLNPSQAISFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSNADHLKVGDFGLSKLIKVQNCQDVYKLTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPIFRAKGYTVELKELTEQCWSADTNKRPHFLEILKKLEKIKENLPTDHHWNIFNA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7148842 7153570 + Conep19aG0095500.1 Cone19ag0927 459364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0927 445 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515(InterPro)
Cone19ag0927 445 CDD STKc_MAP3K-like 175 427 - -
Cone19ag0927 445 MobiDBLite consensus disorder prediction 19 33 - -
Cone19ag0927 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 SMART serkin_6 169 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Cone19ag0927 445 Pfam Ankyrin repeats (3 copies) 46 108 IPR002110 GO:0005515(InterPro)
Cone19ag0927 445 PIRSF ILK 2 445 - -
Cone19ag0927 445 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Cone19ag0927 445 SUPERFAMILY Ankyrin repeat 48 134 IPR036770 -
Cone19ag0927 445 ProSiteProfiles Protein kinase domain profile. 169 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 Pfam Protein tyrosine and serine/threonine kinase 173 427 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 PANTHER SERINE-THREONINE PROTEIN KINASE 34 430 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone19ag0927 445 SUPERFAMILY Protein kinase-like (PK-like) 167 440 IPR011009 -
Cone19ag0927 445 FunFam serine/threonine-protein kinase STY46-like 162 248 - -
Cone19ag0927 445 FunFam Integrin-linked protein kinase family 248 443 - -
Cone19ag0927 445 MobiDBLite consensus disorder prediction 1 42 - -
Cone19ag0927 445 Gene3D - 20 141 IPR036770 -
Cone19ag0927 445 PRINTS Tyrosine kinase catalytic domain signature 398 420 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 PRINTS Tyrosine kinase catalytic domain signature 244 257 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 PRINTS Tyrosine kinase catalytic domain signature 282 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0927 445 ProSitePatterns Protein kinases ATP-binding region signature. 175 196 IPR017441 GO:0005524(InterPro)
Cone19ag0927 445 Gene3D Transferase(Phosphotransferase) domain 1 159 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0927 Cone-Chr19:7148842 Cone5ag1631 Cone-Chr5:11519173 1.31E-92 dispersed
Cone13ag0934 Cone-Chr13:8097746 Cone19ag0927 Cone-Chr19:7148842 1.85E-286 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82400 PF13639 zf-RING_2 5.20E-11 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0927 - - - 0.0