Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0936 ATGGAAGAATCGATCTCTTCGATATGTAATTTAGGGATTTTGGACACGCTTAGCCAAAATGATATTCAAGAAATCATTGACAACTACAGTGGATTTTGCGCCACTACAGAGGCACTCCTCCACCGCGCCGGCGACCTCTCCGTGAGCTCGGAGTTCGTAGCTCACGTTCACTCCCTCTGCAGCCACGGTCTTGAGTCTCTGGTCCGCGATTACTTCCTTCGTCTTCTTGAGGAAACTTTCGAGAACATTGGCGCTGCAAAATTTTGGCAGAAATTTGATGCTTATGAGAAGTTGTCTCTTTTAAGCTGCAATAACCTCACTATTCGTGAGGGTGAAGTTCAGGAAGTATTGTATAAGGCTTTGGAAGAGATATCTTTGGAGAAGAAATATCAGGAGAAGTGCTTGTTGATTCTGGCTCATTCGTTACAGTCGTACAAGAATGATGCATGTGGGAGAACGAATAGTTCGGATGCAGAACGAGTCCATCTCTTTGCCAAGTATCAGTTGATTGTCTCTTCTGTTCTTATGGCTTCTCTTCCTCGGCATTTTCCTGAGATTCTCCGCTGGTACTTTAAATGGAAGTTGGAGGAGTTAAGTAGAATGATGGATGGAGATTTTGAGGATAGCTATGAATCTCAAAGTAAAGATGATATGGATTTAGATGATAAAAACAGAATATCCAACAAGAGTGGTGGAATGGAAATTGATAAAGGTTATCAGATGGGAAAGATATCCGAGAATAGTAAATTGGTAAAGAACATTGGAAAGGTTGTTCACGCTCTTAGAGATCTTGGATTTACATCCATGGCTGAAGATGCCTATGCTTCTGCTATTTTTATGCTGTTGAAGGCAAAAGTCCATAGCCTTGCTGGTGATGACTATAGAAATTCAGTTCTGAATTCTATCAAAGGATGGATACAGGCTGTGCCTCTCCAATTTTTGCATGCCCTGCTTTCATACCTCGGAGATTCTGTAAATTATGAAGGTCCTTTAACAGGTCTTAAATCTCCGTTGGCTTCCCGCCAATCATATTCTTTTCCTGGAACTGATACTCCTTCGGAGGGGCTCATCAGATGGCAATTGCGGCTAGAGTATTTTGCTTATGAAACACTGCAAGATTTAAGAATAGCTGAACTTTTTGAAATTATAGTGGATTATCCTGACAGCGCTCTTGCGATAGAAGATTTAAAGCTGTGTCTTGATTATACTGGTCAACATTCAAAGCTGGTTGAATCATTTATCTCTGCACTACGATATCGCCTGCTGACAGCTGGTGCCTCAACCAATGATATATTGCATCAGTATGTCTCAACCATTAGAGCACTCCGCACTATAGATCCGGCAGGCATTTTTCTTGAAGCAGTTGGTGAGCCAATAAGAGACTATTTAAGGGGAAGAAAAGATACCATAAAATGCATTGTTACCATGCTTACTGATGGAAGTGGTGGGAATCCAAATGTATCTGGAAATACTGGTGATAGCCTTCTTGAAGAATTAAACAGAGATGAAGAAAGTCAGGAAAGTACTGGTGCTGACGATGATTTCCACACTGATGACAAGCAAGCATGGATAAATGCCACACAATGGGAACCCGATCCTGTAGAAGCTTACCCACTGAAGGGTAATAGGAATAGAAGGAAGGTTGACATACTTGGGATGATTGTGAGCATAATTGGTTCAAAAGATCAACTAGTTAGTGAATACTGTGTTATGCTGGCTGACAAGCTTCTCAACAAATCTGACTATGACATAGACTTGGAGATACGCACCTTAGAACTCCTTAAGATACATTTTGGGGAGACTAGCATGCAGAAATGTGAAATTATGCTCAATGATCTGATTGATTCTAAGAGGACGAACACCAATATTAAAGCGACCATACCTCAGCCTTCTCAAACAGCTGCTGAATTGAAGGATAGTACAGTATCAATGGACAATCTTGATGCGACAATCATGTCTCTAAATTTCTGGCCTCCAATTCAGGAAGAGGCCCTTAACCTACCTCCACCAGTTGAACATCTGCTTTCTGATTATGCAAAGAGGTTTAATGAGATCAAGACCCCTCGTAAGCTATTGTGGAAAAAAAATCTTGGTACAGTCAAGTTGGAGCTACAATTTGAAGATAGAGCTGTTCCATTCACGGTGACTCCCATACATGCGGCAATTATTATGCAGTTTCAAGATCAAACCAGCTGGAGCTCTAAATGTCTTGCTGCTGCAATTGGTGTACCAATAGATGTTCTCAATCGACGGATAAATTTCTGGACAAGTAAGGGAATTCTTTCAGAGTCACATGGGACAGACTCTGAGGACCATATATTTACCCTAATAGAAAGCACGGTTGACAGTGGTAAGAATGGTGGTAACCATGGGATTTTTGAGGAGGAGCTTCTTGGAGTTGACGAGGAGGGAGATAAATCTTTTGCCTCCGTTGAGGACCAGCTTCGCAAGGAAATGACCATCTATGAGAAGTTTATCATGGGGATGCTCACAAATTTTGGTAGCATGGCACTTGACCGAATTCACAACACTCTAAAGATGTTTTGTGTAGCCGATCCCGCTTATGACAAATCGCTCCAACAATTGCAAAGCTTCCTATTTGGCCTTGTATCTGAGGAGAAGTTAGAACTACGAGATGGAATGTACCTTTTGAAGAAATAA 2661 41.49 MEESISSICNLGILDTLSQNDIQEIIDNYSGFCATTEALLHRAGDLSVSSEFVAHVHSLCSHGLESLVRDYFLRLLEETFENIGAAKFWQKFDAYEKLSLLSCNNLTIREGEVQEVLYKALEEISLEKKYQEKCLLILAHSLQSYKNDACGRTNSSDAERVHLFAKYQLIVSSVLMASLPRHFPEILRWYFKWKLEELSRMMDGDFEDSYESQSKDDMDLDDKNRISNKSGGMEIDKGYQMGKISENSKLVKNIGKVVHALRDLGFTSMAEDAYASAIFMLLKAKVHSLAGDDYRNSVLNSIKGWIQAVPLQFLHALLSYLGDSVNYEGPLTGLKSPLASRQSYSFPGTDTPSEGLIRWQLRLEYFAYETLQDLRIAELFEIIVDYPDSALAIEDLKLCLDYTGQHSKLVESFISALRYRLLTAGASTNDILHQYVSTIRALRTIDPAGIFLEAVGEPIRDYLRGRKDTIKCIVTMLTDGSGGNPNVSGNTGDSLLEELNRDEESQESTGADDDFHTDDKQAWINATQWEPDPVEAYPLKGNRNRRKVDILGMIVSIIGSKDQLVSEYCVMLADKLLNKSDYDIDLEIRTLELLKIHFGETSMQKCEIMLNDLIDSKRTNTNIKATIPQPSQTAAELKDSTVSMDNLDATIMSLNFWPPIQEEALNLPPPVEHLLSDYAKRFNEIKTPRKLLWKKNLGTVKLELQFEDRAVPFTVTPIHAAIIMQFQDQTSWSSKCLAAAIGVPIDVLNRRINFWTSKGILSESHGTDSEDHIFTLIESTVDSGKNGGNHGIFEEELLGVDEEGDKSFASVEDQLRKEMTIYEKFIMGMLTNFGSMALDRIHNTLKMFCVADPAYDKSLQQLQSFLFGLVSEEKLELRDGMYLLKK 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7169848 7178312 + Conep19aG0096400.1 Cone19ag0936 459373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0936 886 FunFam Anaphase-promoting complex subunit 2 801 886 - -
Cone19ag0936 886 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 14 885 IPR044554 GO:0005680(PANTHER)|GO:0007091(PANTHER)|GO:0070979(PANTHER)
Cone19ag0936 886 Pfam Cullin family 552 764 IPR001373 GO:0006511(InterPro)|GO:0031625(InterPro)
Cone19ag0936 886 SMART cul_2 549 706 IPR016158 -
Cone19ag0936 886 SUPERFAMILY Cullin homology domain 527 777 IPR036317 -
Cone19ag0936 886 ProSiteProfiles Cullin family profile. 553 756 IPR016158 -
Cone19ag0936 886 Gene3D - 801 886 IPR036388 -
Cone19ag0936 886 Gene3D Cullin; Chain C, Domain 2 645 783 - -
Cone19ag0936 886 SUPERFAMILY Winged helix DNA-binding domain 815 884 IPR036390 -
Cone19ag0936 886 FunFam Anaphase-promoting complex subunit 2 517 630 - -
Cone19ag0936 886 Pfam Anaphase promoting complex (APC) subunit 2 825 883 IPR014786 -
Cone19ag0936 886 Gene3D Cullin Repeats 505 629 - -
Cone19ag0936 886 SMART APC2_2 825 884 IPR014786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0936 K03349 - - vvi:100263601 1313.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0944 Cone-Chr13:8129275 Cone19ag0936 Cone-Chr19:7169848 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31