Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0942 ATGCAGAATCAGAATATGAACTTAGTCTTATCTACTGATGCAAAGCCCAGGCTCAAATGGACTCAAGAACTTCATCAAAGATTCGTCGAAGCTGTTGATCAGCTCGGAGGCCCTGACAAGGCCACTCCTAAGTGTTTGATGAGGGTTATGGGTGTTCCTGGGCTCACCTTGTACCATCTCAAGAGCCATTTACAGAAGTATAGGCTTGGGAAAAGCCAACATTCAGAAACCGGCACCATCAGTAAGCATGAAGATTACCGTGCGAATCAGGGCGGCAATGAGCATTTCGCCAAGGATTTCAATAACAGGCGGGCTGATATTAATGAAAGCTTGCAGATTTCACAGGCACTCCAATTGCAGCTAGAACTGCAGAGAGAACTTCACGAGCAGATCAAAGTACAAAAACGTTTGCAGCTGGGAATCGAAGCTCAAGGAAAGCACCTAGAAATGGTACTAAATCAAGCACAAGAAACGCTTTCACAATACCACCGCCCCTCTTCTTCTTCGTCAAATGCCGCCGTAGAGCAGGCTAAAGCCGAGCTCTCCCATTTACTTTCAATGGTTAATGCAACTTCGTCCTTCTCGGAATTAACTGAAACAAACGAGGTGGATTTCATAGAACTCGACGCGAAGAAGAAGCAAATGAAAGGCACGGTATGTTCAAAGGACCGCTCTTTGACATCATCGGAAAGTTCCGGAAGACAAGACTCAAAACTTCCTATGAACTCGGTCTCTGTTGAACTTTCTTTGATGGACATAAATCCAGCATCTAGGAATCAGTACAGTGATCAACTACCAGGTGGGAAAAGATCAGTAGCCCAAAAGGAGAGAGGTCTTAACAAATTAACGAAGTTCGGTATGATCGATTTGAACACGAGACTCATTCAGAATGACATTGATTCAGCCGCAAAACCAGTAGACTTGAATGGCATGGAGGAGTAG 942 44.69 MQNQNMNLVLSTDAKPRLKWTQELHQRFVEAVDQLGGPDKATPKCLMRVMGVPGLTLYHLKSHLQKYRLGKSQHSETGTISKHEDYRANQGGNEHFAKDFNNRRADINESLQISQALQLQLELQRELHEQIKVQKRLQLGIEAQGKHLEMVLNQAQETLSQYHRPSSSSSNAAVEQAKAELSHLLSMVNATSSFSELTETNEVDFIELDAKKKQMKGTVCSKDRSLTSSESSGRQDSKLPMNSVSVELSLMDINPASRNQYSDQLPGGKRSVAQKERGLNKLTKFGMIDLNTRLIQNDIDSAAKPVDLNGMEE 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7219573 7222191 + Conep19aG0097000.1 Cone19ag0942 459379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0942 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Cone19ag0942 313 MobiDBLite consensus disorder prediction 217 241 - -
Cone19ag0942 313 MobiDBLite consensus disorder prediction 220 241 - -
Cone19ag0942 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677(InterPro)
Cone19ag0942 313 Gene3D - 14 72 - -
Cone19ag0942 313 FunFam Myb family transcription factor 14 72 - -
Cone19ag0942 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 254 IPR046955 GO:0003700(InterPro)
Cone19ag0942 313 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Cone19ag0942 313 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Cone19ag0942 313 Pfam MYB-CC type transfactor, LHEQLE motif 111 158 IPR025756 -
Cone19ag0942 313 MobiDBLite consensus disorder prediction 257 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0942 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0942 Cone-Chr19:7219573 Cone3ag0582 Cone-Chr3:2867259 4.78E-39 dispersed
Cone19ag0942 Cone-Chr19:7219573 Cone6ag0578 Cone-Chr6:2827842 1.72E-64 wgd
Cone19ag0942 Cone-Chr19:7219573 Cone9ag0583 Cone-Chr9:2748275 8.98E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g923 . . . Bda11g01213 . . Bma14g01649 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0942 Cone6ag0578 Cone9ag0583 . . . . . Blo11g00775 Bda07g01469 Bda11g01213 Bpe11g01644 . . Bma06g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45346 PF15663 zf-CCCH_3 1.20E-10 CL0537 Cone TF