Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0952 ATGGCTGACCATGAAAATAGGATCATCCACATGAGGCCTAACTTCCCACTCCAATTACTAGAGAAAAGAGAAGTGGTGGAGCAACCTTGTTCCACCTCCACCTACAACCTTGATCAAACCACCATCACGAAACCTTCATCAAGTTCTATAAACCCAACCGACACCGAACCTCCTAAAAAACCACCACCGAAAAGGACCACAACCAAAGATAGGCACACCAAGGTGGACGGTCGTGGACGTCGGATCCGCATGCCGGCCACATGTGCGGCTAGGGTTTTCCAGCTGACTAGGGAACTGGGTCACAAGTCGGATGGTGAGACCATCGAATGGCTCCTCCAACAGGCCGAGCCAGCCGTCATCGCTGCCACTGGCACTGGTACCATTCCGGCCAACTTCACGTCGCTTAACATCTCATTACGGAGCTCGGGTTCTAGCATCTCGGCTCCTTCACACTTGAAAAGTAATTATTTCTTGAGCCCTACTGCACATCACTTGGCTGCAGCTACACAACTAGTTAGAGCAAGTAATGATCAATGGGAGAATGATAATAATTCTTCTCCTAAATTCTTGAATTTCAATCATTCCGATAGCTGTAATGTACATAGTCATAGTACGGGTTCAATCCTAGCGAGTCAAAGTCAAAACCCGGCAACATTTTGGATGGTAGCTAATAATGATAATACTCCTAGTAATCATGTCATGAATGGTGGTGGTGGAAATGGTGTTGGTGCTAATACTTCTCATGAACCTATTTGGGCATTTCCTAATGTTAGTAATAATGGCATCTTTAGGGGGAGTACTAATAGTAGTAGTAGTACCGCTACATCTGGCGCTGGCGGGGGGGCCGGTTTTCATTTTCTGAATTTTCCTCTGCCACCGACAACAGCAGTATTGCCGGGCCAGCAAATGGGCTCAGCGGTTAATGTAAGTGGCATTGGTGGCGGTACAGCAATTAATGATGGTCATTACGGTATTTTGGCAGCACTGAATGGGTTTAGGCAGATTAATTCGGGGGTTTCGGCTACTTCTGTTCAGTCATCTAGAAGTGCCATGAACAACTTGAATCACGACGGAGACGAAGGTGGACATGACCGTATGAGTACTAGTACCGGTCGTGAATCATAG 1125 46.93 MADHENRIIHMRPNFPLQLLEKREVVEQPCSTSTYNLDQTTITKPSSSSINPTDTEPPKKPPPKRTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSISAPSHLKSNYFLSPTAHHLAAATQLVRASNDQWENDNNSSPKFLNFNHSDSCNVHSHSTGSILASQSQNPATFWMVANNDNTPSNHVMNGGGGNGVGANTSHEPIWAFPNVSNNGIFRGSTNSSSSTATSGAGGGAGFHFLNFPLPPTTAVLPGQQMGSAVNVSGIGGGTAINDGHYGILAALNGFRQINSGVSATSVQSSRSAMNNLNHDGDEGGHDRMSTSTGRES 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7261477 7263182 + Conep19aG0098000.1 Cone19ag0952 459389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0952 374 MobiDBLite consensus disorder prediction 31 79 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 343 374 - -
Cone19ag0952 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 345 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone19ag0952 374 MobiDBLite consensus disorder prediction 58 79 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 31 54 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 357 374 - -
Cone19ag0952 374 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Cone19ag0952 374 Pfam TCP family transcription factor 66 185 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0952 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0391 Cone-Chr19:3316359 Cone19ag0952 Cone-Chr19:7261477 1.95E-39 dispersed
Cone19ag0952 Cone-Chr19:7261477 Cone1ag1521 Cone-Chr1:57261889 3.49E-35 dispersed
Cone19ag0075 Cone-Chr19:459768 Cone19ag0952 Cone-Chr19:7261477 4.68E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45347 PF02926 THUMP 9.00E-08 No_clan Cone TF