Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0952 ATGGCTGACCATGAAAATAGGATCATCCACATGAGGCCTAACTTCCCACTCCAATTACTAGAGAAAAGAGAAGTGGTGGAGCAACCTTGTTCCACCTCCACCTACAACCTTGATCAAACCACCATCACGAAACCTTCATCAAGTTCTATAAACCCAACCGACACCGAACCTCCTAAAAAACCACCACCGAAAAGGACCACAACCAAAGATAGGCACACCAAGGTGGACGGTCGTGGACGTCGGATCCGCATGCCGGCCACATGTGCGGCTAGGGTTTTCCAGCTGACTAGGGAACTGGGTCACAAGTCGGATGGTGAGACCATCGAATGGCTCCTCCAACAGGCCGAGCCAGCCGTCATCGCTGCCACTGGCACTGGTACCATTCCGGCCAACTTCACGTCGCTTAACATCTCATTACGGAGCTCGGGTTCTAGCATCTCGGCTCCTTCACACTTGAAAAGTAATTATTTCTTGAGCCCTACTGCACATCACTTGGCTGCAGCTACACAACTAGTTAGAGCAAGTAATGATCAATGGGAGAATGATAATAATTCTTCTCCTAAATTCTTGAATTTCAATCATTCCGATAGCTGTAATGTACATAGTCATAGTACGGGTTCAATCCTAGCGAGTCAAAGTCAAAACCCGGCAACATTTTGGATGGTAGCTAATAATGATAATACTCCTAGTAATCATGTCATGAATGGTGGTGGTGGAAATGGTGTTGGTGCTAATACTTCTCATGAACCTATTTGGGCATTTCCTAATGTTAGTAATAATGGCATCTTTAGGGGGAGTACTAATAGTAGTAGTAGTACCGCTACATCTGGCGCTGGCGGGGGGGCCGGTTTTCATTTTCTGAATTTTCCTCTGCCACCGACAACAGCAGTATTGCCGGGCCAGCAAATGGGCTCAGCGGTTAATGTAAGTGGCATTGGTGGCGGTACAGCAATTAATGATGGTCATTACGGTATTTTGGCAGCACTGAATGGGTTTAGGCAGATTAATTCGGGGGTTTCGGCTACTTCTGTTCAGTCATCTAGAAGTGCCATGAACAACTTGAATCACGACGGAGACGAAGGTGGACATGACCGTATGAGTACTAGTACCGGTCGTGAATCATAG 1125 46.93 MADHENRIIHMRPNFPLQLLEKREVVEQPCSTSTYNLDQTTITKPSSSSINPTDTEPPKKPPPKRTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSISAPSHLKSNYFLSPTAHHLAAATQLVRASNDQWENDNNSSPKFLNFNHSDSCNVHSHSTGSILASQSQNPATFWMVANNDNTPSNHVMNGGGGNGVGANTSHEPIWAFPNVSNNGIFRGSTNSSSSTATSGAGGGAGFHFLNFPLPPTTAVLPGQQMGSAVNVSGIGGGTAINDGHYGILAALNGFRQINSGVSATSVQSSRSAMNNLNHDGDEGGHDRMSTSTGRES 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7261477 7263182 + Conep19aG0098000.1 Cone19ag0952 459389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0952 374 MobiDBLite consensus disorder prediction 31 79 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 343 374 - -
Cone19ag0952 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 345 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone19ag0952 374 MobiDBLite consensus disorder prediction 58 79 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 31 54 - -
Cone19ag0952 374 MobiDBLite consensus disorder prediction 357 374 - -
Cone19ag0952 374 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Cone19ag0952 374 Pfam TCP family transcription factor 66 185 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0391 Cone-Chr19:3316359 Cone19ag0952 Cone-Chr19:7261477 1.95E-39 dispersed
Cone19ag0952 Cone-Chr19:7261477 Cone1ag1521 Cone-Chr1:57261889 3.49E-35 dispersed
Cone19ag0075 Cone-Chr19:459768 Cone19ag0952 Cone-Chr19:7261477 4.68E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45347 PF02926 THUMP 9.00E-08 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0952 - - - 0.0