Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0957 ATGTCAAGCAGAAGATCATCTCGATCCAGCAGGCAGCAGTCAGGTGTTTCCAGCAACAGAAATAATCATATCTGTGATGATCAGATCACTGATCTCGTTTCCAAGTTACAGCAACTTATTCCTGAAATTCGCCATAGGCGTTCCGACAAGGTATCATCGTCAAGGGTATTGCAGGAGACATGCAACTACATAAGGAACTTGCACAGAGAGGTGGATGATCTAAGCCAGCGTTTATCAGAGCTTTTGGCCACAACTGATTCTAACAGTGCTCAAGCAGCCATTATCAGGAGCTTATTTATGTAA 303 43.56 MSSRRSSRSSRQQSGVSSNRNNHICDDQITDLVSKLQQLIPEIRHRRSDKVSSSRVLQETCNYIRNLHREVDDLSQRLSELLATTDSNSAQAAIIRSLFM 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7286094 7286681 + Conep19aG0098500.1 Cone19ag0957 459394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0957 100 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 89 IPR036638 GO:0046983(InterPro)
Cone19ag0957 100 PANTHER TRANSCRIPTION FACTOR PRE 6 100 IPR044293 GO:0006355(InterPro)|GO:0040008(InterPro)|GO:0046983(InterPro)
Cone19ag0957 100 Coils Coil 64 84 - -
Cone19ag0957 100 Pfam Helix-loop-helix DNA-binding domain 27 67 IPR011598 GO:0046983(InterPro)
Cone19ag0957 100 CDD bHLH_AtPRE_like 18 84 - -
Cone19ag0957 100 Gene3D - 25 96 IPR036638 GO:0046983(InterPro)
Cone19ag0957 100 FunFam Transcription factor ILI6 8 96 - -
Cone19ag0957 100 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0957 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0957 Cone-Chr19:7286094 Cone4ag0553 Cone-Chr4:2497399 4.40E-31 dispersed
Cone13ag0965 Cone-Chr13:8253690 Cone19ag0957 Cone-Chr19:7286094 6.75E-57 wgd
Cone13ag0079 Cone-Chr13:477903 Cone19ag0957 Cone-Chr19:7286094 7.04E-16 wgd
Cone19ag0083 Cone-Chr19:489905 Cone19ag0957 Cone-Chr19:7286094 1.93E-29 wgd
Cone19ag0957 Cone-Chr19:7286094 Cone2ag0854 Cone-Chr2:34538839 3.53E-18 wgd
Cone19ag0957 Cone-Chr19:7286094 Cone6ag0602 Cone-Chr6:2951485 2.65E-33 wgd
Cone19ag0957 Cone-Chr19:7286094 Cone7ag0527 Cone-Chr7:2447716 6.57E-33 wgd
Cone19ag0957 Cone-Chr19:7286094 Cone9ag0607 Cone-Chr9:2865608 9.38E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g883 Blo01g00423 Blo16g01124 Bda01g02165 Bda11g01226 Bpe13g01421 . . . Cmo04g01724 . . . . . Sed06g1543 Cpe09g00166 Cpe01g01455 Bhi07g01587 Tan04g1097 Cmetu10g1757 Lac13g0303 Hepe10g1727 . . Cla05g02457 Cam05g2643 Cec05g2676 Cco05g2713 Clacu05g2647 Cmu05g2501 Cre05g2614 Cone13ag0965 Cone19ag0957 Cone6ag0602 Cone9ag0607 . Csa05g02434 Chy10g00987 Cme10g00431 Blo06g00900 Blo11g00764 Bda07g01462 Bda11g01226 Bpe11g01635 Bpe02g02351 Bma01g00090 Bma06g00676 . Cmo04g02887 . Cma04g01645 . Car04g01686 Car15g00275 Cpe13g00943 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000232 9 5 5 6 7 5 7 5 5 5 5 5 7 5 5 4 5 6 8 5 4 4 5 2 4 5 5 8 5 3 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45348 PF13561 adh_short_C2 3.20E-57 CL0063 Cone TF