Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0959 ATGTCTAGTTATGGGATGGCCTTCTTACCAACACATTTCATGCGTCAAACACCTCACAATGAAGATCATCATCATGATCACTCCCATCCTCTTTCCATTCTTAACCCAATTCAGCCTGATCATGATCACTTTCATGGAGTCGCTTCCTTTCTAGGGAAAAGAACTGTGTCATTCTCAGATCCATTGGGTGGTGAACAAGAAGCCAAACACAATATTATAAATGGAGAAGAAGATTTATCAGATGATATTGAGTCGTCGCAGGCCGGCGATCAAAAGAAGAGGAGGCTTAACGTAGAACAAGTGAAGACACTTGAGAAGAACTTTGAGTTAGGGAACAAGCTCCATCCCGAAAGGAAACTGCAGTTGGCTAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATTTGGTTCCAAAATAGAAGGGCTAGATGGAAGACTAAACAGTTGGAGAAAGATTATGAGGTACTTAAGATGCAATTGGATGCTACTAAAGCTCATAATGAATCACTCTTGAATCAGAACCAAAAGCTCCAAGCAGAGATAATGAGCCTAAAAAGTAAAGACTATCCAACAGGATCAATAAATCTGAATAAAGAGACAGACGGGTGTTGTAGTAATAGAAGTGAAAGCAGCTCAGAGATCAACAAAGCAGCCATTGATAGCCCATTATCAAGCTCTAATCCAGCAGCATTAATGAGCAAAACCCTGTTTCCAATATGCTCCATAAGATCTCCTCCACGTGTTCATGTCGTCACACAGCTCTTTCATGATCATCATCATCTTCAAAACCAGACGTGTAGTAATAATAACTATGATAGTAACATTCATCATGATCAAACGGGGAAAGAAGGAAGCTTAGGCAACTTTATATTCTCTGGAAATGTTGAATATCAACCTGGGTTTTGGCCCTGGTTGGATCATCATCATCATCATCAACAACATTTCACTTGA 951 40.38 MSSYGMAFLPTHFMRQTPHNEDHHHDHSHPLSILNPIQPDHDHFHGVASFLGKRTVSFSDPLGGEQEAKHNIINGEEDLSDDIESSQAGDQKKRRLNVEQVKTLEKNFELGNKLHPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKMQLDATKAHNESLLNQNQKLQAEIMSLKSKDYPTGSINLNKETDGCCSNRSESSSEINKAAIDSPLSSSNPAALMSKTLFPICSIRSPPRVHVVTQLFHDHHHLQNQTCSNNNYDSNIHHDQTGKEGSLGNFIFSGNVEYQPGFWPWLDHHHHHQQHFT 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7311391 7312528 + Conep19aG0098700.1 Cone19ag0959 459396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0959 316 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677(InterPro)
Cone19ag0959 316 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677(InterPro)
Cone19ag0959 316 SMART HOX_1 90 151 IPR001356 GO:0003677(InterPro)
Cone19ag0959 316 Gene3D - 84 153 - -
Cone19ag0959 316 SUPERFAMILY Homeodomain-like 85 149 IPR009057 -
Cone19ag0959 316 CDD homeodomain 91 148 IPR001356 GO:0003677(InterPro)
Cone19ag0959 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 80 220 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone19ag0959 316 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone19ag0959 316 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677(InterPro)
Cone19ag0959 316 FunFam Homeobox-leucine zipper protein ATHB-13 82 151 - -
Cone19ag0959 316 Coils Coil 146 187 - -
Cone19ag0959 316 Pfam Homeobox associated leucine zipper 147 187 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0959 316 Pfam Homeodomain 92 145 IPR001356 GO:0003677(InterPro)
Cone19ag0959 316 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0959 Cone-Chr19:7311391 Cone2ag0135 Cone-Chr2:717434 3.48E-27 dispersed
Cone13ag0969 Cone-Chr13:8272664 Cone19ag0959 Cone-Chr19:7311391 4.77E-187 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone19ag0959 Cone-Chr19:7311391 4.32E-49 wgd
Cone16ag0147 Cone-Chr16:853202 Cone19ag0959 Cone-Chr19:7311391 2.04E-30 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone2ag0185 Cone-Chr2:961623 8.93E-44 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone6ag0604 Cone-Chr6:2966504 4.75E-66 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone9ag0609 Cone-Chr9:2879326 9.38E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45349 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0959 K09338 - sly:543527 299.286