Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0959 | ATGTCTAGTTATGGGATGGCCTTCTTACCAACACATTTCATGCGTCAAACACCTCACAATGAAGATCATCATCATGATCACTCCCATCCTCTTTCCATTCTTAACCCAATTCAGCCTGATCATGATCACTTTCATGGAGTCGCTTCCTTTCTAGGGAAAAGAACTGTGTCATTCTCAGATCCATTGGGTGGTGAACAAGAAGCCAAACACAATATTATAAATGGAGAAGAAGATTTATCAGATGATATTGAGTCGTCGCAGGCCGGCGATCAAAAGAAGAGGAGGCTTAACGTAGAACAAGTGAAGACACTTGAGAAGAACTTTGAGTTAGGGAACAAGCTCCATCCCGAAAGGAAACTGCAGTTGGCTAGGGCTCTTGGTTTGCAGCCTAGACAGATTGCTATTTGGTTCCAAAATAGAAGGGCTAGATGGAAGACTAAACAGTTGGAGAAAGATTATGAGGTACTTAAGATGCAATTGGATGCTACTAAAGCTCATAATGAATCACTCTTGAATCAGAACCAAAAGCTCCAAGCAGAGATAATGAGCCTAAAAAGTAAAGACTATCCAACAGGATCAATAAATCTGAATAAAGAGACAGACGGGTGTTGTAGTAATAGAAGTGAAAGCAGCTCAGAGATCAACAAAGCAGCCATTGATAGCCCATTATCAAGCTCTAATCCAGCAGCATTAATGAGCAAAACCCTGTTTCCAATATGCTCCATAAGATCTCCTCCACGTGTTCATGTCGTCACACAGCTCTTTCATGATCATCATCATCTTCAAAACCAGACGTGTAGTAATAATAACTATGATAGTAACATTCATCATGATCAAACGGGGAAAGAAGGAAGCTTAGGCAACTTTATATTCTCTGGAAATGTTGAATATCAACCTGGGTTTTGGCCCTGGTTGGATCATCATCATCATCATCAACAACATTTCACTTGA | 951 | 40.38 | MSSYGMAFLPTHFMRQTPHNEDHHHDHSHPLSILNPIQPDHDHFHGVASFLGKRTVSFSDPLGGEQEAKHNIINGEEDLSDDIESSQAGDQKKRRLNVEQVKTLEKNFELGNKLHPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKMQLDATKAHNESLLNQNQKLQAEIMSLKSKDYPTGSINLNKETDGCCSNRSESSSEINKAAIDSPLSSSNPAALMSKTLFPICSIRSPPRVHVVTQLFHDHHHLQNQTCSNNNYDSNIHHDQTGKEGSLGNFIFSGNVEYQPGFWPWLDHHHHHQQHFT | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7311391 | 7312528 | + | Conep19aG0098700.1 | Cone19ag0959 | 459396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0959 | 316 | PRINTS | Lambda-repressor HTH signature | 118 | 127 | IPR000047 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | PRINTS | Lambda-repressor HTH signature | 127 | 143 | IPR000047 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | SMART | HOX_1 | 90 | 151 | IPR001356 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | Gene3D | - | 84 | 153 | - | - | |
Cone19ag0959 | 316 | SUPERFAMILY | Homeodomain-like | 85 | 149 | IPR009057 | - | |
Cone19ag0959 | 316 | CDD | homeodomain | 91 | 148 | IPR001356 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 80 | 220 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Cone19ag0959 | 316 | ProSitePatterns | 'Homeobox' domain signature. | 122 | 145 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cone19ag0959 | 316 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 147 | IPR001356 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 82 | 151 | - | - | |
Cone19ag0959 | 316 | Coils | Coil | 146 | 187 | - | - | |
Cone19ag0959 | 316 | Pfam | Homeobox associated leucine zipper | 147 | 187 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone19ag0959 | 316 | Pfam | Homeodomain | 92 | 145 | IPR001356 | GO:0003677(InterPro) | |
Cone19ag0959 | 316 | MobiDBLite | consensus disorder prediction | 73 | 95 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0959 | Cone-Chr19:7311391 | Cone2ag0135 | Cone-Chr2:717434 | 3.48E-27 | dispersed | |
Cone13ag0969 | Cone-Chr13:8272664 | Cone19ag0959 | Cone-Chr19:7311391 | 4.77E-187 | wgd | |
Cone16ag0859 | Cone-Chr16:9133183 | Cone19ag0959 | Cone-Chr19:7311391 | 4.32E-49 | wgd | |
Cone16ag0147 | Cone-Chr16:853202 | Cone19ag0959 | Cone-Chr19:7311391 | 2.04E-30 | wgd | |
Cone19ag0959 | Cone-Chr19:7311391 | Cone2ag0185 | Cone-Chr2:961623 | 8.93E-44 | wgd | |
Cone19ag0959 | Cone-Chr19:7311391 | Cone6ag0604 | Cone-Chr6:2966504 | 4.75E-66 | wgd | |
Cone19ag0959 | Cone-Chr19:7311391 | Cone9ag0609 | Cone-Chr9:2879326 | 9.38E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45349 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0959 | K09338 | - | sly:543527 | 299.286 |