Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0963 ATGTTTCAGTGGCTAAATCATGGAAATGGTTTATCAAACACAAGGAATGGAGTAGGCGAAGTACTGATTAACCCGATTACCGCACGAAATCTGCGATTGAGATGGAGATTCATCGCCGGCAAAGACATATCCGCCACCCCTGCAGTGGCGAACGGGGTGGTCTATTTTCCCTCGTGGAACGGATTTTTATATGCAGTGAATGCATTCAGTGGTGCCCTAATTTGGGAACAAAATCTTAGCCAGTTAACTGGGTTAAGAGGTACTGGGGTCACTGTAAACGTGACCGTGTCGAGATCTACTCCGACTGTTGTTGCTAACCTCTTGATTGTCGGAATCTATGGTCCTGCTGTCGTGATTTCTGTGGAAAGAGCAACTGGCAGGCTTGTTTGGTTGACTACGCTTGAAGATAGTCCTTTTAGAATTATTACAATGTCTGGAACAGCTTATATGGGGTCATTCTACGTTGGAGTGTCATCCTTGGAGGAGGTAACGCAATCGGCTCAATGTTGCACATTTAGAGGAAGCCTGGCAAGGTTAGACATCCGAACAGGAGCCGTGATATGGCGAACGTACACAATTCCCAATAACGGCGACCGGCTTGGCGGTTATTCTGGAGCTGCCATATGGGGAAGCAGCCCCGCCATTGATGTATATCGACAACTTGTTTATGTAGGGACAGGTCAACTCTATTCAGCACCACCTGAGGTGCTAAAATGTCAACAACTGCGAAATAATCAATCTACAAAACCAATACGTCCTGAACAATGTATTGGGCCAGATGTCCATTATGATTCGATATTGGGCCTGGATATTTTGACCGGTAGGATTGTTTGGAGCAGGCAGTTAGGAGGCTACGATGTGTTTTACTTTGCATGTTTGGTTCCAAATAACCCGGATTGTCCTCCTGGGCCTAATTTGGATGCGGATTTTGGAGAAGCTCCGATGCTGCTTAGGATCTATCCAAATGGGTCCACTCGTGGGCCTCGTGACGTTGTCGTGGCTGTCCAGAAGAGTGGCTTTGCTTGGGCCCTTGATCGTGATTCTGGTGACATAGTTTGGTCCAAGTTAGCGGGTCCTGGCGGGAAAGAGGGAGGGGGCACGTGGGGGGCCGCCACAGATGGCAGAAGAGTATACACAAACATAGTAAATAGCGATAGAGTAAAGTTCACTCTTGCACCATCTAACGCTGCCACAACAGCGGGCGGGTGGGTGGCCCTGGATGCAAACAACGGTCAAATCATCTGGTCAACACCGAACCCAAGCAATGAGACGGCCAATGGGCCTGTCTCGGTAGCCAACGGTGTGGTCTTTGCGGGCTCGGTGGCTTCAAATGGTCCGATTTATGCAATGGATGCTTATAGTGGGAGAATCATTTGGTCTTATGATACCGGAGCTACTGTTTATGGCGGAATGGCAGTGAGCTATGGGTGCATTTTTGTTGGGCATGGTTATAAAGTTAGCCTTGCAAATTTCCATCCTACTTGGTCTAGTGGAACTTCTCTTTTTGCTTTTTGTGTTTATTGA 1524 47.83 MFQWLNHGNGLSNTRNGVGEVLINPITARNLRLRWRFIAGKDISATPAVANGVVYFPSWNGFLYAVNAFSGALIWEQNLSQLTGLRGTGVTVNVTVSRSTPTVVANLLIVGIYGPAVVISVERATGRLVWLTTLEDSPFRIITMSGTAYMGSFYVGVSSLEEVTQSAQCCTFRGSLARLDIRTGAVIWRTYTIPNNGDRLGGYSGAAIWGSSPAIDVYRQLVYVGTGQLYSAPPEVLKCQQLRNNQSTKPIRPEQCIGPDVHYDSILGLDILTGRIVWSRQLGGYDVFYFACLVPNNPDCPPGPNLDADFGEAPMLLRIYPNGSTRGPRDVVVAVQKSGFAWALDRDSGDIVWSKLAGPGGKEGGGTWGAATDGRRVYTNIVNSDRVKFTLAPSNAATTAGGWVALDANNGQIIWSTPNPSNETANGPVSVANGVVFAGSVASNGPIYAMDAYSGRIIWSYDTGATVYGGMAVSYGCIFVGHGYKVSLANFHPTWSSGTSLFAFCVY 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7333410 7335252 + Conep19aG0099500.1 Cone19ag0963 459400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0963 507 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 3 470 IPR011047 -
Cone19ag0963 507 Gene3D - 2 500 - -
Cone19ag0963 507 Pfam PQQ-like domain 32 229 IPR002372 -
Cone19ag0963 507 Pfam PQQ-like domain 402 481 IPR002372 -
Cone19ag0963 507 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 3 506 - -
Cone19ag0963 507 SMART ire1_9 101 133 IPR018391 -
Cone19ag0963 507 SMART ire1_9 390 418 IPR018391 -
Cone19ag0963 507 SMART ire1_9 213 281 IPR018391 -
Cone19ag0963 507 SMART ire1_9 428 462 IPR018391 -
Cone19ag0963 507 SMART ire1_9 140 191 IPR018391 -
Cone19ag0963 507 SMART ire1_9 47 78 IPR018391 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0963 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0963 Cone-Chr19:7333410 Cone7ag0536 Cone-Chr7:2497182 2.90E-219 dispersed
Cone13ag0973 Cone-Chr13:8293963 Cone19ag0963 Cone-Chr19:7333410 3.07E-118 wgd
Cone19ag0963 Cone-Chr19:7333410 Cone7ag0534 Cone-Chr7:2481990 1.50E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g872 . . . . . Bpe10g00859 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006756 0 0 1 1 1 1 0 1 2 1 1 1 0 1 0 0 1 4 0 1 1 2 1 0 2 1 1 1 1 8 35