Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0966 ATGAAGCGCAAAATACTTAAACTCGTAGCAGACGGGTTTCATCAAGAAGCTTTAACTTTATACACACGGCACCATTCTTCCTCACTTCGAGCTCACAAGTTCACCTTTCCTCCTCTCTTCAAAGCATGCGCCAAGCTGAAATCTCCACCACAAGGCCGAATGGCCCATACGCAATTGATCAAGATGGGATTTCAAGCAGATATTTATGCGGCAACAGCTCTCACAGACATGTACATGAAGCTTGGTTTTCTCAGAGATGCAGTCAAGGTGTTCGACGAGATGCCTGAGAGAAACGTAGCATCTTTGAACGCGATGATTTCTGGGTTTTCGCAAAATGGGTTTTCTAAAGAAGCGTGGGTTGTGAAAAATAAGGTTTTTGGTACTTGGAAAGCTAATTCGGTTACTATATCTTGCTTGTTGTCAGCGTGTGACGATGTTTATAATGGGAAGGGAATTCATTGTTGGGCGGTTAAGTTGGGTGTTGAAAAGGACGTATATGTTGCAACTTCGCTTGTGAGTTTGTATTTTAACTGTGAAGAAATCGTTTTTGCGTTTAAGTTGTTTGATGAAATGCCTGAAAAGAATGTGGTAAGCTATAATGCTTGTATGTCTGGACTTATACAGAATGGGATGCCAAGCGTTGTATTCGACGTATTTAAGCAGATGAAAGAAAGGGTATATTGGGAATTAAATGAAGTTACTTTTGCTTCTGTTCTTTGTGCTTGTTCCAGTCTTTTATATCTTCCATTTGGAAGGCAGATTCATGGGCTAATCCTGAAAGTAAAATTACGTGAAGAGTCTGATCCAGTGGTGGGAACAGCTTTAGTGGATATGTACTTAAAATGCGGTGATTGGAAATGTGCATACCAAGTTTTTGAAGAGATTAAAGACATCAGAAATTTGATTACTTGGAATTCTATGATTTCTGGGATGATGTTGAATGAACAGAGTGAGATTGCGGTTCAGCTGTTTGAATTGTTGAAGACTGATTCAGGATTTAAGCCTGATTCAGTGACATGGAATTCAATGATCAGTGGATTTTCACAAAGGGGAAAATCAGCCGAGGCTTTTAGTTACTTTCGTAAAATGCAATCAGGTGGAATTTCTCCATGTTTAAAATCTACCACGAGTATTTTATCAGCTTGTTCAGATTTGTCTGATTTTCAATGTGGTAGAGAGATTCATGGATATGCAATTAAGAGCCTTGAAAATACTGAAGTGTTCATTGTCACTGCAATTATAGATATGTATATGAAATGTGGATATTCTTCATGGGCAAGAAGGGTTTTCAATCAGTTTGACAGAAAACCTAAAGACCATGCATTTTGGAATGCAATGATTTCTGGGTATGGAAGAAATGGTGAAAGTAGAACCGCATTTGAAATCTTTTACCAAATGCTTGAAGAGAGGGTGCACCCAAGTGCAGCCACATTTTCTTGTGTTCTATCTTTATGTAGCCATACAGGTCAGGTCAAAAAAGGGTGGGAAATTTTCAACATGATGAACAGAGAATATGGTGTAGAGCCAGATTCAGATCATTATGGATGCATGGTGGATCTTTTGGGAAGGTCCGGTCAGTTGGACAAAGCTCGGGAATTGATCCTGAAAATTCGCAAACCATCTAGTTCGGTTTTTTCTTCATTGCTTGGTTCTTGCAAGTCTCATTTAGATCCCAAGCTTGGCGAGGAAATGGTACTGAAAATCTTAGAATTAGAACCTGAAAACCCAACTCCGATTGTGATCCTTTCTAACATATATGCTGATCTTGGAAGGTGGAGTGATGTAGAAAGGGTTAGAGAAATGATGAATCATAAAGGTCTCAGAAAACTCCCCGGCTTTAGTTCAATAGTAGTAACATAA 1860 39.14 MKRKILKLVADGFHQEALTLYTRHHSSSLRAHKFTFPPLFKACAKLKSPPQGRMAHTQLIKMGFQADIYAATALTDMYMKLGFLRDAVKVFDEMPERNVASLNAMISGFSQNGFSKEAWVVKNKVFGTWKANSVTISCLLSACDDVYNGKGIHCWAVKLGVEKDVYVATSLVSLYFNCEEIVFAFKLFDEMPEKNVVSYNACMSGLIQNGMPSVVFDVFKQMKERVYWELNEVTFASVLCACSSLLYLPFGRQIHGLILKVKLREESDPVVGTALVDMYLKCGDWKCAYQVFEEIKDIRNLITWNSMISGMMLNEQSEIAVQLFELLKTDSGFKPDSVTWNSMISGFSQRGKSAEAFSYFRKMQSGGISPCLKSTTSILSACSDLSDFQCGREIHGYAIKSLENTEVFIVTAIIDMYMKCGYSSWARRVFNQFDRKPKDHAFWNAMISGYGRNGESRTAFEIFYQMLEERVHPSAATFSCVLSLCSHTGQVKKGWEIFNMMNREYGVEPDSDHYGCMVDLLGRSGQLDKARELILKIRKPSSSVFSSLLGSCKSHLDPKLGEEMVLKILELEPENPTPIVILSNIYADLGRWSDVERVREMMNHKGLRKLPGFSSIVVT 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7342332 7346184 + Conep19aG0099800.1 Cone19ag0966 459403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0966 619 FunFam Pentatricopeptide repeat-containing protein At1g19720 262 390 - -
Cone19ag0966 619 FunFam Pentatricopeptide repeat-containing protein At4g14850 149 249 - -
Cone19ag0966 619 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Cone19ag0966 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cone19ag0966 619 Gene3D Tetratricopeptide repeat domain 257 395 IPR011990 GO:0005515(InterPro)
Cone19ag0966 619 Gene3D Tetratricopeptide repeat domain 152 246 IPR011990 GO:0005515(InterPro)
Cone19ag0966 619 Gene3D Tetratricopeptide repeat domain 396 492 IPR011990 GO:0005515(InterPro)
Cone19ag0966 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Cone19ag0966 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat family 335 383 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat family 439 485 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat family 194 242 IPR002885 -
Cone19ag0966 619 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 408 619 - -
Cone19ag0966 619 Pfam E motif 558 616 IPR046848 -
Cone19ag0966 619 Pfam PPR repeat 273 297 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat 302 329 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat 101 119 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat 72 99 IPR002885 -
Cone19ag0966 619 Pfam PPR repeat 513 538 IPR002885 -
Cone19ag0966 619 FunFam Pentatricopeptide repeat-containing protein 1 148 - -
Cone19ag0966 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cone19ag0966 619 Gene3D Tetratricopeptide repeat domain 494 617 IPR011990 GO:0005515(InterPro)
Cone19ag0966 619 PANTHER OS07G0578800 PROTEIN-RELATED 7 144 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone19ag0966 619 NCBIfam pentatricopeptide repeat 338 370 IPR002885 -
Cone19ag0966 619 NCBIfam pentatricopeptide repeat 443 474 IPR002885 -
Cone19ag0966 619 NCBIfam pentatricopeptide repeat 477 511 IPR002885 -
Cone19ag0966 619 NCBIfam pentatricopeptide repeat 197 225 IPR002885 -
Cone19ag0966 619 NCBIfam pentatricopeptide repeat 302 337 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0966 Cone-Chr19:7342332 Cone1ag0462 Cone-Chr1:4324118 9.63E-89 dispersed
Cone19ag0966 Cone-Chr19:7342332 Cone6ag1117 Cone-Chr6:7116784 6.12E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g863 . . . . . Bpe10g00857 . Bma15g00168 Cmo04g01715 . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0966 . . . . . . . . . . . . . . . . . Cma04g01637 . Car04g01678 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015078 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 14