Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0968 | ATGTCCTCCTTCTCACTCTGTTCCTCATTTCGTATATTAGCTCCTCAATGGAGGCAGAAAAACATGCGCTTCTTAATCTTCCTGCATTCAAAGAGAAAGACAAGCTTCTTCCCTCGCCTCTCTGCTTCTTCTTCACTCAATGAAGATTCTTCTTCAATCCCAAAATCGACCCAGTTAGGTTTCGATCCTTCAGAAGAATTCTATGGGCTCGAAGTTGATATAAAGCCAAGAGATGTTGTTTCTGCCGAACCCAAGCCAAGGTCCTGGTTCGGTCCGAACGGTCAGTACATTAGGGAGCTACCCTGCCCAAGTTGCCGGGGCAGGGGATATACACCTTGTACAGAGTGCGGGATAGAAAGATCCCGAGCAGATTGTTCTCTATGTAATGGCAAGGGTATAATGACTTGCCGTAGATGCTTAGGAGATCGAGTCATATGGGAGGAATCGATTGATGAACAACCTTGGGAAAAAGCTCGATCCGTTTCCCCCCTCAGAATGAAAGAGGATGATGAAGTAGACAATTTGGACATAAAGCTCGAAGCGAAGAAGAAATCAAAGCGCGTATACCAATCTCCATCTCCCGAAGTTGGATTAAAGATCAGTCGATCGCTAAAAAGTCTCAATGCTAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATTCATCGCGATCCCACTCTTCATGCACAAAGAGTGGCTGCAATTAAGAGAGCCAAAGGAACTGCTGCAGCAAGAAAGCTTGCATCGGAATCTCTCAAAGTTTATTTTAGTGATCCGGAAAACCGCCTGAAAAGGAGCATTTCCATGAAAGGAGTAAAATTTTACTGCAAAAACTGTGGACGAGAGGGACATAGGAGACACTACTGTCCCGAACTCAAGGACGTCTTGGACGGTAGGCAGTTTAAGTGTGGGACATGTGGGGAAAAGGGTCATAACAGAAGAACTTGTCAAAAGTCTAAATTGCCGGATCGGAAAATCAAAGTCAAGAGGCATTATCAATGCAAAGTATGTGGACAAAAAGGTCATAATAGAAGAACCTGTTCCACGTCCGGGTCAAGTGATAAAAAACATCAAGTTAAGCTTCTTCGAGGGCATGATCGTAAAAGGTGCCCGAGATTGATGGGTCCGATATCATTGACCGATGAAGATCGGACGAAGGGGGGCTCCATTCAGGGAAGCAAAATGTATAACTGCTCTTTGTGCCAACAAAAGGGGCATAATAAGAGGACATGCTCCAATAAAAAAGATCATGTATTGTTTGTAGATCAGTAA | 1272 | 43.79 | MSSFSLCSSFRILAPQWRQKNMRFLIFLHSKRKTSFFPRLSASSSLNEDSSSIPKSTQLGFDPSEEFYGLEVDIKPRDVVSAEPKPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRADCSLCNGKGIMTCRRCLGDRVIWEESIDEQPWEKARSVSPLRMKEDDEVDNLDIKLEAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKRAKGTAAARKLASESLKVYFSDPENRLKRSISMKGVKFYCKNCGREGHRRHYCPELKDVLDGRQFKCGTCGEKGHNRRTCQKSKLPDRKIKVKRHYQCKVCGQKGHNRRTCSTSGSSDKKHQVKLLRGHDRKRCPRLMGPISLTDEDRTKGGSIQGSKMYNCSLCQQKGHNKRTCSNKKDHVLFVDQ | 423 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 7355453 | 7358060 | + | Conep19aG0100000.1 | Cone19ag0968 | 459405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0968 | 423 | ProSiteProfiles | Zinc finger CCHC-type profile. | 276 | 291 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | SMART | c2hcfinal6 | 397 | 413 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | SMART | c2hcfinal6 | 275 | 291 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | SMART | c2hcfinal6 | 302 | 318 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | SMART | c2hcfinal6 | 333 | 349 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 94 | 372 | IPR051714 | GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER) | |
| Cone19ag0968 | 423 | ProSiteProfiles | Zinc finger CCHC-type profile. | 302 | 318 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cone19ag0968 | 423 | Gene3D | - | 253 | 325 | - | - | |
| Cone19ag0968 | 423 | SUPERFAMILY | Retrovirus zinc finger-like domains | 273 | 319 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0976 | Cone-Chr13:8309799 | Cone19ag0968 | Cone-Chr19:7355453 | 1.69E-118 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0968 | - | - | - | 0.0 |