Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0968 ATGTCCTCCTTCTCACTCTGTTCCTCATTTCGTATATTAGCTCCTCAATGGAGGCAGAAAAACATGCGCTTCTTAATCTTCCTGCATTCAAAGAGAAAGACAAGCTTCTTCCCTCGCCTCTCTGCTTCTTCTTCACTCAATGAAGATTCTTCTTCAATCCCAAAATCGACCCAGTTAGGTTTCGATCCTTCAGAAGAATTCTATGGGCTCGAAGTTGATATAAAGCCAAGAGATGTTGTTTCTGCCGAACCCAAGCCAAGGTCCTGGTTCGGTCCGAACGGTCAGTACATTAGGGAGCTACCCTGCCCAAGTTGCCGGGGCAGGGGATATACACCTTGTACAGAGTGCGGGATAGAAAGATCCCGAGCAGATTGTTCTCTATGTAATGGCAAGGGTATAATGACTTGCCGTAGATGCTTAGGAGATCGAGTCATATGGGAGGAATCGATTGATGAACAACCTTGGGAAAAAGCTCGATCCGTTTCCCCCCTCAGAATGAAAGAGGATGATGAAGTAGACAATTTGGACATAAAGCTCGAAGCGAAGAAGAAATCAAAGCGCGTATACCAATCTCCATCTCCCGAAGTTGGATTAAAGATCAGTCGATCGCTAAAAAGTCTCAATGCTAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATTCATCGCGATCCCACTCTTCATGCACAAAGAGTGGCTGCAATTAAGAGAGCCAAAGGAACTGCTGCAGCAAGAAAGCTTGCATCGGAATCTCTCAAAGTTTATTTTAGTGATCCGGAAAACCGCCTGAAAAGGAGCATTTCCATGAAAGGAGTAAAATTTTACTGCAAAAACTGTGGACGAGAGGGACATAGGAGACACTACTGTCCCGAACTCAAGGACGTCTTGGACGGTAGGCAGTTTAAGTGTGGGACATGTGGGGAAAAGGGTCATAACAGAAGAACTTGTCAAAAGTCTAAATTGCCGGATCGGAAAATCAAAGTCAAGAGGCATTATCAATGCAAAGTATGTGGACAAAAAGGTCATAATAGAAGAACCTGTTCCACGTCCGGGTCAAGTGATAAAAAACATCAAGTTAAGCTTCTTCGAGGGCATGATCGTAAAAGGTGCCCGAGATTGATGGGTCCGATATCATTGACCGATGAAGATCGGACGAAGGGGGGCTCCATTCAGGGAAGCAAAATGTATAACTGCTCTTTGTGCCAACAAAAGGGGCATAATAAGAGGACATGCTCCAATAAAAAAGATCATGTATTGTTTGTAGATCAGTAA 1272 43.79 MSSFSLCSSFRILAPQWRQKNMRFLIFLHSKRKTSFFPRLSASSSLNEDSSSIPKSTQLGFDPSEEFYGLEVDIKPRDVVSAEPKPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRADCSLCNGKGIMTCRRCLGDRVIWEESIDEQPWEKARSVSPLRMKEDDEVDNLDIKLEAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKRAKGTAAARKLASESLKVYFSDPENRLKRSISMKGVKFYCKNCGREGHRRHYCPELKDVLDGRQFKCGTCGEKGHNRRTCQKSKLPDRKIKVKRHYQCKVCGQKGHNRRTCSTSGSSDKKHQVKLLRGHDRKRCPRLMGPISLTDEDRTKGGSIQGSKMYNCSLCQQKGHNKRTCSNKKDHVLFVDQ 423
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 7355453 7358060 + Conep19aG0100000.1 Cone19ag0968 459405
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0968 423 ProSiteProfiles Zinc finger CCHC-type profile. 276 291 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 SMART c2hcfinal6 397 413 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 SMART c2hcfinal6 275 291 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 SMART c2hcfinal6 302 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 SMART c2hcfinal6 333 349 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 94 372 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
Cone19ag0968 423 ProSiteProfiles Zinc finger CCHC-type profile. 302 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag0968 423 Gene3D - 253 325 - -
Cone19ag0968 423 SUPERFAMILY Retrovirus zinc finger-like domains 273 319 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0976 Cone-Chr13:8309799 Cone19ag0968 Cone-Chr19:7355453 1.69E-118 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0968 - - - 0.0