Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0972 ATGGGGCAAGTACTTGGTTGTATTCAAGTGGACCAGTCAACTGTTGCTATAAAAGAAACTTTTGGGAAGTTTGATGATGTTCTCGACCCTGGTTGTCACTGTCTGCCATGGTGTTTGGGGAGTCAGGTTGCAGGTCACCTCTCCTTACGTGTGCAGCAGCTTGATGTCCGTTGTGAAACAAAAACAAAGGATAATGTTTTTGTTACTGTGGTTGCTTCTATTCAATTCCGAGCTTTGGCAGAGAAGGCTTCAGATGCTTTCTATAAGCTTAGTAATACTAGAGCCCAGATCCAGGCTTATGTCTTTGATGTTATAAGGGCTAGTGTTCCCAAGTTGGAACTAGACTCAACCTTTGAACAAAAGAATGATATAGCAAAAGCTGTGGAAGTGGAACTCGAAAAGGCCATGTCAGCCTACGGGTTTGAGATAGTTCAAACTCTTATTGTGGATATTGAACCAGATGAGCATGTGAAGAGAGCAATGAATGAGATTAATGCTGCTGCTAGAATGAGGGTGGCTGCGAATGAGAAAGCCGAAGCAGAAAAGATATTGCAGATCAAGCGAGCTGAAGGAGATGCAGACTCCAAGTACCTTGCTGGGCTGGGTATCGCCCGACAGAGACAGGCCATCGTAGATGGGCTAAGAGACAGTGTTCTTGCCTTCTCTTCAACCGTACCCGGCACTACTTCTAAGGATGTGATGGACATGGTTCTGGTCACTCAGTACTTCGACACAATGAAGGAGATTGGTGCTTCTTCAAAGTCAAACTCTGTGTTCATCCCACACGGACCTGGTGCCGTCAAAGATGTTGCTTCTCAAATCAGAGAGGGCCTTCTTCAAGCTAATTCCACTGCCGAGTAA 861 45.41 MGQVLGCIQVDQSTVAIKETFGKFDDVLDPGCHCLPWCLGSQVAGHLSLRVQQLDVRCETKTKDNVFVTVVASIQFRALAEKASDAFYKLSNTRAQIQAYVFDVIRASVPKLELDSTFEQKNDIAKAVEVELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAANEKAEAEKILQIKRAEGDADSKYLAGLGIARQRQAIVDGLRDSVLAFSSTVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSNSVFIPHGPGAVKDVASQIREGLLQANSTAE 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7371249 7375005 - Conep19aG0100400.1 Cone19ag0972 459409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0972 286 SMART PHB_4 5 165 IPR001107 -
Cone19ag0972 286 SUPERFAMILY Band 7/SPFH domain 45 171 IPR036013 -
Cone19ag0972 286 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 6 280 IPR050710 -
Cone19ag0972 286 FunFam Hypersensitive-induced response protein 1 41 167 - -
Cone19ag0972 286 CDD SPFH_like_u4 10 278 - -
Cone19ag0972 286 Coils Coil 157 190 - -
Cone19ag0972 286 Gene3D Band 7 domain 41 167 IPR036013 -
Cone19ag0972 286 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0972 Cone-Chr19:7371249 Cone2ag0178 Cone-Chr2:936867 9.39E-166 dispersed
Cone16ag0869 Cone-Chr16:9175484 Cone19ag0972 Cone-Chr19:7371249 1.57E-29 transposed
Cone16ag0868 Cone-Chr16:9173862 Cone19ag0972 Cone-Chr19:7371249 5.98E-95 wgd
Cone19ag0088 Cone-Chr19:509911 Cone19ag0972 Cone-Chr19:7371249 2.39E-174 wgd
Cone19ag0972 Cone-Chr19:7371249 Cone2ag0177 Cone-Chr2:935462 6.16E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g852 Blo01g00417 Blo16g01133 Bda01g02253 . Bpe13g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0972 . . . . . . . . . . . . Bma01g00082 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84