Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0974 | ATGGAATTTGCACAATCGGCTCTGATCGAGCAATCGTTCAACGGGCAATACTCGCTCTGGATTCGAGAATCTCTCGACGAGCTGGCGGAAATTTTCACCATCACTGATCCTAGCATATCCTGCCATCCAATCGTTTTCGCGAGCCGTGGATTCTTGAAGATGACGGGATATTCGAGAGAGGAAGTGATTGGCAAAAACGGAAGGATGTTTCAGGGACCGAGAACGTGCAGAAGATCGGTGATGGAAATTAGGGAGGCGATTAGGGACGAGAGAGCGGTTCAGGTGAAACTGTTGAATTATAGGAAGGATGGGACGCCGTTTTGGATGTTTTTTCAGATGAGTCCTGTTTTCAGCAAGGAAGATGGGAGGGTGATTCATTTCATCGGAGTTCAGGTTCCGATTTTGAAGAAGCACAGGAGGAGGTCTTTGAGTAGTGGATTTGGAAGAAATGGAGTTGGTTTATGTGAGGAAGACAACTCCATGATAATGCGGGAGATTGTGTTTGGATCGTGCCGGAGAGAGGTTTGCTCGGATTCTTTGCTCGAATTAGGTCGGGTTTTGGACAGAGATTTAGTGTTGGATTCTGATAATAGAGGGATTGAAGAAACATGTGAAGCAAGTGAGGGTGAAAAGCAAAGAGCTGCAATTGCCATTAGCAACATATTTGCAGTTCTAATCCAACACAGTGAGATGAAGGGAAAATCCGTGTGTGGCCAGAGATGCAGCTTACGTGGAGCTGGCTGCTTTCTCTCTTCCTCCTTAAATATATCTCTTGGTAGAATCAAACAAAGTTTTGTATTAACTGATCCTCACTTACCAGACTTTCCTATAGTTTATGCAAGTGATGCCTTTCTAAAATTAACAGGCTATACTAGACATGAAGTGTTGGGGCGAAATTGTAGATTCTTAAGCGGGGCCAATACAGATTTCTCGACCTTATGTCAGATAAAGGAAAACATTAGAACTGAACAGCCATGCACAGTACGTATTCTAAACTACAGGAAGGACAAGAGTTTGTTTTGGAATATTCTTCACATAGCACCTGTCCGAAATGCTTCCGGCAAGATAGCATACTTTGTGGGTATCCAGATAGATGAGGATTGTGAAAACCAGGATGTACATCGGCTCAGCCCCAAGATAAGGCATCTCAGTGTAGTAGGTGCCGTGAAAGTTGCCGTGAGGAGCTTATCAATAGGTGTGGGCCCCTCCGAAGATAAGTTATGA | 1224 | 44.36 | MEFAQSALIEQSFNGQYSLWIRESLDELAEIFTITDPSISCHPIVFASRGFLKMTGYSREEVIGKNGRMFQGPRTCRRSVMEIREAIRDERAVQVKLLNYRKDGTPFWMFFQMSPVFSKEDGRVIHFIGVQVPILKKHRRRSLSSGFGRNGVGLCEEDNSMIMREIVFGSCRREVCSDSLLELGRVLDRDLVLDSDNRGIEETCEASEGEKQRAAIAISNIFAVLIQHSEMKGKSVCGQRCSLRGAGCFLSSSLNISLGRIKQSFVLTDPHLPDFPIVYASDAFLKLTGYTRHEVLGRNCRFLSGANTDFSTLCQIKENIRTEQPCTVRILNYRKDKSLFWNILHIAPVRNASGKIAYFVGIQIDEDCENQDVHRLSPKIRHLSVVGAVKVAVRSLSIGVGPSEDKL | 407 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 7385983 | 7388679 | + | Conep19aG0100600.1 | Cone19ag0974 | 459411 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0974 | 407 | NCBIfam | PAS domain S-box protein | 276 | 365 | IPR000014 | - | |
| Cone19ag0974 | 407 | NCBIfam | PAS domain S-box protein | 44 | 129 | IPR000014 | - | |
| Cone19ag0974 | 407 | ProSiteProfiles | PAC domain profile. | 91 | 146 | IPR000700 | - | |
| Cone19ag0974 | 407 | PANTHER | PROTEIN TWIN LOV 1 | 7 | 366 | - | GO:0005634(PANTHER) | |
| Cone19ag0974 | 407 | Pfam | PAS domain | 273 | 365 | IPR000014 | - | |
| Cone19ag0974 | 407 | Pfam | PAS domain | 42 | 132 | IPR000014 | - | |
| Cone19ag0974 | 407 | FunFam | Protein TWIN LOV 1 isoform D | 31 | 227 | - | - | |
| Cone19ag0974 | 407 | ProSiteProfiles | PAS repeat profile. | 21 | 90 | IPR000014 | - | |
| Cone19ag0974 | 407 | FunFam | protein TWIN LOV 1 | 264 | 400 | - | - | |
| Cone19ag0974 | 407 | CDD | PAS | 44 | 134 | IPR000014 | - | |
| Cone19ag0974 | 407 | ProSiteProfiles | PAS repeat profile. | 277 | 299 | IPR000014 | - | |
| Cone19ag0974 | 407 | SMART | pas_2 | 19 | 88 | IPR000014 | - | |
| Cone19ag0974 | 407 | SMART | pas_2 | 252 | 325 | IPR000014 | - | |
| Cone19ag0974 | 407 | CDD | PAS | 273 | 365 | IPR000014 | - | |
| Cone19ag0974 | 407 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 32 | 131 | IPR035965 | - | |
| Cone19ag0974 | 407 | ProSiteProfiles | PAC domain profile. | 324 | 378 | IPR000700 | - | |
| Cone19ag0974 | 407 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 265 | 365 | IPR035965 | - | |
| Cone19ag0974 | 407 | Gene3D | PAS domain | 264 | 397 | - | - | |
| Cone19ag0974 | 407 | Gene3D | PAS domain | 31 | 151 | - | - | |
| Cone19ag0974 | 407 | SMART | pac_2 | 327 | 369 | IPR001610 | - | |
| Cone19ag0974 | 407 | SMART | pac_2 | 94 | 137 | IPR001610 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0974 | - | - | - | - | 0.0 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0974 | Cone-Chr19:7385983 | Cone5ag1195 | Cone-Chr5:5398973 | 6.92E-57 | dispersed | |
| Cone13ag0984 | Cone-Chr13:8343150 | Cone19ag0974 | Cone-Chr19:7385983 | 6.50E-216 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g848 | . | . | . | . | . | . | . | . | Cmo04g01708 | . | . | . | . | . | . | . | Cpe01g01442 | Bhi07g01608 | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone13ag0984 | Cone19ag0974 | . | . | Lsi04g00459 | Csa05g02417 | Chy10g00974 | Cme10g00448 | . | . | . | . | . | . | . | . | . | . | . | Cma04g01630 | . | Car04g01670 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0013588 | 0 | 4 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 25 |