Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0976 ATGGATTCGTCTTCTTCATCATCTTCGGCTCTGCAGCTTGTCATGGCGGCACTTGTCGGAGCTTCGTTAATGGCCGTATCGGCCTTCTACATTCACAAGCGCAGTGTTGATCAAGTCCTTCAGCGTCTCATCGAGATCCGACGCAAGCCTATTCGTAATGCTAATCTCTCGCTCGTTGCTGAAGGAGAAGAAGAAGAAGATCAATATGAAGAAGACGAAGAAATAGAAGGAGGAGAAGAGCTGGATGATGGAGGAGAGTCTGCTTCCGATTCTGAGGTCACTATCGATCGAAAGCTGTGGGAGAGAGTTTCTTCGAGGTCTCTGGACGAGAGTATGTTGCGGCGCTATAGGATTTCGTCTTCGGTTCCGAATGTTGCTTTGTTACAGGAGGGCGCAAGGTTTGATCGGCCGACGAATGTTGGAGATAAACAGTGTTGCTCTTCTTTGGATAAACTTAATTTCATCCCCTCAGGCCTGGAGCCTCTTCAAACAAATCATATACGTGGAGTGAATCAATCAGTTAATCACTCTAGTTTCAGTTCAAGGGTTGCTTCCATTAGTAAGTTGGGGACTCCTAGATCCCCATTCGAGAGTACTGGAGGCTCAGATGACGAACAAACAGAGCTTGAAGATGGAGAAAACGTCATCTTTGACTATGGGACTATAGAATCTTCAGTTGATTTATTGAACATACACGATAGACATTCGAATCTTCAAAAGGTGTGTGCTGAGCCTAATAAAGGTGATGATGGAGACTTCAAGGAGATTTCTGGAGTAAATATTCGTGAGGTGAAAGATGGTGGAGATTTGCATGGTGATGGGAAGATTGGTTCAGTTCCAGGTTGTATAACATTGACTGATGCACTCATTTCCGACGTACTTTTACCTCTTGGAACAAGAATGCATGATTCAAGAAATGTAGAAGAGGAAGAAGTATGGAAGATGATTCGCGAATGTTTGGATCTGCGCAACTGTTATGTCTATAGGGAAAATGATTTTCCATGGAGAAACAAAGACACAGAAGCTTGTAGTACTCCAAAAATGAATAGCGATCCATTTCACTTTCAACCTGTTGAAGCTTCAGCCCATCGCTATAGAATGGAAGATGGTGTTATACATGTTTATGCACATGAAAATGACACTGAAGAGTTGTTCCCTGTTGCAAGTGCTACAGACTTTTTCACTGATATGCATCATGTTCTTAAAATCGTGTCTGTTGGAAATGTTCGTTCTGCTTGCTACCATAGACTCAGATTTCTTGAAGAGAAATTCCGCCTTCATCTGTTAGTAAATGCAGACAGGGAGTTTCTTGCCCAGAAGAGTGCGCCACACCGCGATTTTTATAATATTAGGAAAGTAGACACGCATATACATCATTCTGCCTGCATGAACCAGAAGCATCTTTTGCGCTTCATTAAGTCAAAGCTAAGAAAAGAACCTGACGAGGTTGTCATTTTCAGAGATGGACAATATCTTACACTTAAAGAAGTATTTGAGAGTCTGGACTTGACAGGGTATGACCTGAATGTGGATTTACTGGATGTTCATGCTGATAAGAGTACTTTTCATCGTTTTGATAAATTCAACCTCAAGTATAATCCTTGCGGGCAGAGCAGACTCAGAGAGATATTCTTGAAACAAGACAATCTTATCCAAGGACGGTTTCTGGCAGAAGTAACAAAGGAAGTTTTATCGGATCTGGATGCTAGCAAGTACCAGCTGGCAGAATATAGGATATCTATCTATGGACGGAAAGAAAGTGAATGGGATCAGTTGGCAAGTTGGTTTGTGAACAATTCAATCTATAGCCAGAATGCTGTGTGGTTGATCCAGCTTCCACGGCTATACAATGTGTACAAGAAAATGGGAATTGTTACTTCGTTTCAGAATATCTTGGACAATGTTTTCATTCCATTATTTGAAGTAACGGTCAATCCAAACTCTCATCCTCAATTACACATGTTCCTGATGCAGGTGGTCGGATTTGACCTTGTAGATGACGAAAGTAAGCCAGAAAGACGCCCAACTAAGCACATGCCAACTCCAGCTGAATGGACAAATGAATTTAATCCCGCATATTCCTATTATACTTATTATTGCTATGCCAACTTGTACACTCTTAACAAGCTTCGTGAATCAAAAGGATTTCCAACAATAAAGTTGCGACCTCATTGTGGGGAGGCTGGTGATGTTGACCATTTGGCTGCTGGATTTCTTCTATGCCATAATATCTCTCATGGGATCAATCTTCGTAAATCTCCAGTTTTGCAGTATTTATATTACCTGGCTCAGGTTGGATTGGCTATGTCACCACTAAGCAACAATTCCCTTTTCTTAGATTATCATAGAAACCCCTTTCCCACATTCTTTCAACGTGGCCTAAATGTCTCACTCTCAAGCGATGATCCTTTACAAATTCATTTAACAAAAGAAGCGCTTGTCGAAGAATATAGCATTGCTTCCAAGGTATGGAAGCTGAGTGCCTGTGACCTCTGTGAGATAGCAAGAAATTCCGTCTACCAATCTGGATTCTCACACTATGACAAGTCACATTGGCTCGGTGACAAATACTTCCTGAGAGGCCCAGAAGGAAATAATATTCACAAGACAAACGTGCCCCATCCACGGATCTCTTTCCGGCATGAAACGTGGAAGGAGGAAATGCAGTATGTTTATTCGGGGAAAACCAAGTTCCGTGAAGACATCGACCCTTAA 2715 41.95 MDSSSSSSSALQLVMAALVGASLMAVSAFYIHKRSVDQVLQRLIEIRRKPIRNANLSLVAEGEEEEDQYEEDEEIEGGEELDDGGESASDSEVTIDRKLWERVSSRSLDESMLRRYRISSSVPNVALLQEGARFDRPTNVGDKQCCSSLDKLNFIPSGLEPLQTNHIRGVNQSVNHSSFSSRVASISKLGTPRSPFESTGGSDDEQTELEDGENVIFDYGTIESSVDLLNIHDRHSNLQKVCAEPNKGDDGDFKEISGVNIREVKDGGDLHGDGKIGSVPGCITLTDALISDVLLPLGTRMHDSRNVEEEEVWKMIRECLDLRNCYVYRENDFPWRNKDTEACSTPKMNSDPFHFQPVEASAHRYRMEDGVIHVYAHENDTEELFPVASATDFFTDMHHVLKIVSVGNVRSACYHRLRFLEEKFRLHLLVNADREFLAQKSAPHRDFYNIRKVDTHIHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGQYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKEVLSDLDASKYQLAEYRISIYGRKESEWDQLASWFVNNSIYSQNAVWLIQLPRLYNVYKKMGIVTSFQNILDNVFIPLFEVTVNPNSHPQLHMFLMQVVGFDLVDDESKPERRPTKHMPTPAEWTNEFNPAYSYYTYYCYANLYTLNKLRESKGFPTIKLRPHCGEAGDVDHLAAGFLLCHNISHGINLRKSPVLQYLYYLAQVGLAMSPLSNNSLFLDYHRNPFPTFFQRGLNVSLSSDDPLQIHLTKEALVEEYSIASKVWKLSACDLCEIARNSVYQSGFSHYDKSHWLGDKYFLRGPEGNNIHKTNVPHPRISFRHETWKEEMQYVYSGKTKFREDIDP 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7392438 7401317 + Conep19aG0100800.1 Cone19ag0976 459413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0976 904 MobiDBLite consensus disorder prediction 60 89 - -
Cone19ag0976 904 Pfam AMP deaminase 309 891 IPR006329 GO:0003876(InterPro)|GO:0032264(InterPro)
Cone19ag0976 904 NCBIfam AMP deaminase 355 891 IPR006329 GO:0003876(InterPro)|GO:0032264(InterPro)
Cone19ag0976 904 SUPERFAMILY Metallo-dependent hydrolases 302 891 IPR032466 -
Cone19ag0976 904 FunFam Probable amp deaminase 541 887 - -
Cone19ag0976 904 CDD AMPD 393 888 IPR006329 GO:0003876(InterPro)|GO:0032264(InterPro)
Cone19ag0976 904 ProSitePatterns Adenosine and AMP deaminase signature. 797 803 IPR006650 GO:0009168(InterPro)|GO:0019239(InterPro)
Cone19ag0976 904 Gene3D - 463 553 - -
Cone19ag0976 904 PANTHER AMP DEAMINASE 304 896 IPR006329 GO:0003876(PANTHER)|GO:0003876(InterPro)|GO:0005829(PANTHER)|GO:0006188(PANTHER)|GO:0032264(InterPro)|GO:0046033(PANTHER)
Cone19ag0976 904 MobiDBLite consensus disorder prediction 189 209 - -
Cone19ag0976 904 FunFam AMP deaminase 463 553 - -
Cone19ag0976 904 Gene3D - 363 887 - -
Cone19ag0976 904 MobiDBLite consensus disorder prediction 58 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0976 K01490 - - vvi:100265525 1238.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1413 Cone-Chr13:10182004 Cone19ag0976 Cone-Chr19:7392438 0 dispersed
Cone19ag0976 Cone-Chr19:7392438 Cone19ag1407 Cone-Chr19:9223615 0 dispersed
Cone19ag0976 Cone-Chr19:7392438 Cone10ag0396 Cone-Chr10:1881105 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2