Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0978 ATGGGAGTGGATTACTACAACGTGTTGAAGGTGAACAGGAATGCGAGCGATGAGGATCTGAAGAAGGCGTACAAGAGGTTAGCGATGATTTGGCATCCGGACAAGAATCCGATCAACAAGAGCGAAGCGGAGGCGAAGTTCAAGCAGATTTCTGAAGCCTATGATGTTCTTACCGATCCTGAGAAGCGTCAGATCTACGATTTCTACGGCGAGGAGGTTCTTAAGTCCACTGAATTCCCTCCTCCACGAAGCGATTACGGTTCCTCGTTCCGGTACATGCCTCGTGATGCTGATGACATTTTCACGGAGCTTTTCGGCGGATCTGGAGGTGGTAGGAGCCGTGGGTTTGGAGGAGAGGGGGGTTTTAGGAGCGGTAATGTGGAAGCTAGGAGTCAGAGCGGTAGGAAAGCGTTGCCGACTGAGAGCAGACTTCTGTGTAGCTTGGAGGAGCTTTACAAAGGTTCCAGGAGGAAGATGAGGATTTCTCGCTCTGTTCCAGATGATTTTGGAAAGATGAGGACTGTTGAAGAGATACTAAGAATTGATATCAAACCTGGTTGGAAGAAGGGCACAAAAATCACCTTTCCTGAGAAAGGCAATCAAGAACCTGGTCTTACTCCAGGCGATCTTGTTTTTGTCGTGGATGAGAAACCCCATGAAGTTTACCAGAGAGATGGAAATGATCTGGTAGTCGATCTGAAGATTACACTACTAGAAGCACTCACTGGAAAGACTCTTAATATAACAACCCTGGATGGAAGAAACCTCACAATTGTGACAGATATAGTCAAGCCTGGACAAGAAATGGTGATGCAGAATGAAGGAATGCCTATCTCAAAAGACCCAAGTAAGAAGGGAAACCTTATAATCAAGTTTGATGTGAGGTTTCCTTCTAGGCTTACTTCAGAACAGAAGTATGATCTAAGGAGGGTGCTAGGTGGAGCTGAAATCTAG 954 46.23 MGVDYYNVLKVNRNASDEDLKKAYKRLAMIWHPDKNPINKSEAEAKFKQISEAYDVLTDPEKRQIYDFYGEEVLKSTEFPPPRSDYGSSFRYMPRDADDIFTELFGGSGGGRSRGFGGEGGFRSGNVEARSQSGRKALPTESRLLCSLEELYKGSRRKMRISRSVPDDFGKMRTVEEILRIDIKPGWKKGTKITFPEKGNQEPGLTPGDLVFVVDEKPHEVYQRDGNDLVVDLKITLLEALTGKTLNITTLDGRNLTIVTDIVKPGQEMVMQNEGMPISKDPSKKGNLIIKFDVRFPSRLTSEQKYDLRRVLGGAEI 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7403154 7404944 - Conep19aG0101000.1 Cone19ag0978 459415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0978 317 FunFam DNAJ heat shock family protein 218 312 - -
Cone19ag0978 317 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cone19ag0978 317 SUPERFAMILY Chaperone J-domain 3 120 IPR036869 -
Cone19ag0978 317 FunFam Dnaj homolog subfamily b member 136 217 - -
Cone19ag0978 317 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 313 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cone19ag0978 317 Pfam DnaJ C terminal domain 142 297 IPR002939 -
Cone19ag0978 317 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cone19ag0978 317 MobiDBLite consensus disorder prediction 111 136 - -
Cone19ag0978 317 CDD DnaJ 4 59 IPR001623 -
Cone19ag0978 317 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cone19ag0978 317 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cone19ag0978 317 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cone19ag0978 317 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cone19ag0978 317 CDD DnaJ_C 141 300 - -
Cone19ag0978 317 SUPERFAMILY HSP40/DnaJ peptide-binding domain 142 220 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cone19ag0978 317 SUPERFAMILY HSP40/DnaJ peptide-binding domain 222 305 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cone19ag0978 317 Gene3D DnaJ domain 3 116 IPR036869 -
Cone19ag0978 317 Gene3D - 140 217 - -
Cone19ag0978 317 SMART dnaj_3 3 62 IPR001623 -
Cone19ag0978 317 Pfam DnaJ domain 4 67 IPR001623 -
Cone19ag0978 317 Gene3D - 219 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0978 K09510 - - csv:101205643 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0978 Cone-Chr19:7403154 Cone19ag1396 Cone-Chr19:9179990 2.76E-124 dispersed
Cone13ag0986 Cone-Chr13:8351183 Cone19ag0978 Cone-Chr19:7403154 4.04E-212 wgd
Cone16ag0143 Cone-Chr16:821198 Cone19ag0978 Cone-Chr19:7403154 7.54E-143 wgd
Cone19ag0978 Cone-Chr19:7403154 Cone2ag0864 Cone-Chr2:34610349 3.08E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g837 . . . . . . . . Cmo04g01698 Cmo18g01210 . Cma18g01189 . Car18g01097 Sed06g1576 Cpe09g00141 Cpe01g01433 Bhi07g01633 Tan04g1134 Cmetu10g0412 Lac13g0266 Hepe10g1703 . . Cla05g02486 Cam05g2670 Cec05g2704 Cco05g2739 Clacu05g2672 Cmu05g2526 Cre05g2641 Cone13ag0986 Cone19ag0978 . . . Csa05g02400 Chy10g00962 Cme10g00464 . . . . . . . . . . . Cma04g01621 . Car04g01662 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009703 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 33