Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0981 ATGCAGTTTTTTCGAGAGGTCAAGACGCTCAAACTCCGAAGCCACCTGAACAAATACTTAGTCGCGGACGAGGCCGGAGAAACCGTCCGGCAAAGCCGGAACAGCTCATCGCGGCGGGCAATATGGGTGGTGGAACAAGTAGAAGGCAAAACCAATGCAATAACGTTGAAAAGTTATTCCGACGGAAAATACTTAACCGCAACTAATGCAGCTTTTCTTCTAGGAATGACAGGGAACAAGGTCCTTCTGACAAATCCAGACAAGCTGTCAGACTGGAATATCCAGTGGGACCCAATACAAGATGGCTTCCTACTGAAGCTGAGAGCTTGGTGTGGGACCTACTTGCGGGCGAATGGTGGGACCCCTCCGTGGAGGAACTCCATCACGCACGACGAACCACATACTTCTTCGACCAGGAATTGGGTCTTATGGGGTGTGATTAAGGTTGAAGATTATGAACTTGCAGAGATCGAAAATAATCATGAAATATTTGGGTCTAGGGCGAGCTTCTCTTCAATGGCGTCATCCGATGAGTTGGACCGGACGGGTTCTGAACCGGGTTCGCCTATGATTACCAAGTCTCCTAGATTCTCTTTAAAGCAGATGGGTTCTCATCTGGGTTCGCCATTGCGGGCTGCTGACACTAAGTCACCAAAATGGTCTCAAAACCAGGTGGCCGCCGTGTCCTCCACCACGCTCCGATCCGGCATGGACTTCTTCCTCAACGCGAAGGCGGTGCGTCTTCGCGGCAACCACGACAAGTATCTTCTAGCTGACGAAGACGAAGAGACCGTGACCCAGGACCGAAACGGATCCGCCAAAACAGCCCGATGGACGGTCGAGTTCGTACCGGGATCCGAAAACATCATCCGGCTCAAGAGCTGTTTTGGAAGATACCTCACTGCTTCTAACCAGCCCTTCTTGCTCGGTATGACCGGCCGGAAAGTGCTCCAGACGCTTCCACGTCGGCTTGATTCTTCAGTGGAGTGGGAACCGAACCGGGAAGGGAACCGGGTCAAGCTGAAGACCAGGTACGGGAATTTCTTGAGAGCGAACGGCGGCGTTCCGCCGTGGAGAAATTCGGTGACTCATGATATTCCTCATAGAACCGTCACACAAGATTGGGTTGTATGGGACGTCGACGTTTTAGAGATTCACGTCCGGTCACCGGATCGTAAATCCGAGCCGCCTCAACCGCTTAGCCATCAGGATTCTTTGAACTTCGGTTCCAGCCCTCCTTCTCCCGTTTCAGTTACACCCGGCCATTTTTCAAGACAAGAGTCTAGTGAATCTACAGTGAGTTCGCCACCAAAATTAGAAGGAAGGATCATATATTACCATGTCGCCGATGAAAATGGTGAGGTAGATGATACAGTGGAGGGTAGCTCTTTCACGTTTAAGGGAAATGCAGTCGAAGAGTTGACTCGTAAATTGGAGGAAGAGACGGGTTTACAAGGCATTCTTGTTTGTACTAGAAGCCCTTTGAATCGGAAGCTTTACCCTCTTCGTTTGCAGCTCCCTCCCAACAATGCTAATATGCAGGTTGTTGTCGTTCTCAACTCGTCCAAAGCTTTCGAACCTTCAGTTTTATTTTGGGTGTATCAGGTTAAAGGAGGTACCAAGTTGGGAAGTGCAGAAGCGATTGGGATACAAGTTATTCAGGCATCTCTTGTATATTTCAGGACTCATTGTTTATGGAGGAGCAGATGTGAATAG 1716 49.71 MQFFREVKTLKLRSHLNKYLVADEAGETVRQSRNSSSRRAIWVVEQVEGKTNAITLKSYSDGKYLTATNAAFLLGMTGNKVLLTNPDKLSDWNIQWDPIQDGFLLKLRAWCGTYLRANGGTPPWRNSITHDEPHTSSTRNWVLWGVIKVEDYELAEIENNHEIFGSRASFSSMASSDELDRTGSEPGSPMITKSPRFSLKQMGSHLGSPLRAADTKSPKWSQNQVAAVSSTTLRSGMDFFLNAKAVRLRGNHDKYLLADEDEETVTQDRNGSAKTARWTVEFVPGSENIIRLKSCFGRYLTASNQPFLLGMTGRKVLQTLPRRLDSSVEWEPNREGNRVKLKTRYGNFLRANGGVPPWRNSVTHDIPHRTVTQDWVVWDVDVLEIHVRSPDRKSEPPQPLSHQDSLNFGSSPPSPVSVTPGHFSRQESSESTVSSPPKLEGRIIYYHVADENGEVDDTVEGSSFTFKGNAVEELTRKLEEETGLQGILVCTRSPLNRKLYPLRLQLPPNNANMQVVVVLNSSKAFEPSVLFWVYQVKGGTKLGSAEAIGIQVIQASLVYFRTHCLWRSRCE 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7408164 7412228 - Conep19aG0101300.1 Cone19ag0981 459418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0981 571 MobiDBLite consensus disorder prediction 389 436 - -
Cone19ag0981 571 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 237 522 - -
Cone19ag0981 571 MobiDBLite consensus disorder prediction 399 436 - -
Cone19ag0981 571 FunFam BnaC05g19630D protein 5 147 - -
Cone19ag0981 571 Pfam DUF569 associated ubiquitin-like domain 441 518 IPR054726 -
Cone19ag0981 571 Gene3D - 245 364 - -
Cone19ag0981 571 FunFam BnaC05g19630D protein 241 381 - -
Cone19ag0981 571 Pfam Beta-trefoil domain of unknown function (DUF569) 237 378 IPR007679 -
Cone19ag0981 571 Pfam Beta-trefoil domain of unknown function (DUF569) 1 144 IPR007679 -
Cone19ag0981 571 SUPERFAMILY Actin-crosslinking proteins 241 381 IPR008999 -
Cone19ag0981 571 SUPERFAMILY Actin-crosslinking proteins 9 145 IPR008999 -
Cone19ag0981 571 Gene3D - 6 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0981 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0608 Cone-Chr12:5395581 Cone19ag0981 Cone-Chr19:7408164 7.21E-191 wgd
Cone13ag0988 Cone-Chr13:8356897 Cone19ag0981 Cone-Chr19:7408164 0 wgd
Cone16ag0880 Cone-Chr16:9198983 Cone19ag0981 Cone-Chr19:7408164 1.28E-81 wgd
Cone19ag0981 Cone-Chr19:7408164 Cone8ag0625 Cone-Chr8:6181482 8.56E-185 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112