Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0983 ATGCCTCGATCACCACATTCTCACTCTGCAGCAACACCTCTCGCCGCCATTTCTATCATCTTCTTCCTCCTCACAACCTCCTCCGCATCAGCTCACACCTGCTCGTCTTCTGCTTCTCCAAGATCTCCATGCCCACCATTCACCACTTCTCCTCCCTTCCCTTTCTCCTTCACACCAGGTTGCGGCCACCCTTCCTTCCACCTCAGCTGCTCGTCTTCCAACACTACTCGCCGCTCCATTCTCACCATTAACGACCTCTCTTTCTCTCTCATCGCCTTCAATACCGCCTCCTCCACTCTCCTCCTCTCCCCTCTCCTTCCCCCTGAGCAAACCTGCTCTCAATCACTCTTCACCTCCATTCCTGACCGCCCAATCAATCTCTCCAGCTCCCCCTTTCGAATCTCCGACGCTTCCTGTTCCCGCCTCTCTTTCCTCCGACCTTGCTCACCTCCAAACCTTCCTAACTGCAGCCACTGTCCTTGGCAATGTAAGCTTATAAAAAACCCGATTCATTTACTTCACGATTGCGGTTCAGAAACGAACCGGTCAATTTCAGAACAGGGCTGTCAAGGAGACGTTCTAGGGTTCTTAGATAGGATTCTTAAAATTGGGGTTGATATCGAGTGGGACGAAGATCAAGATGCGTACTTTTCGAGCTGCAAAGATTGTGAAACGAAAAAGAATGGTGTTTGCGGATTCAATTCTTCCAGCCCTAAGAATGATTTTATCTGCTTTACTCGTTCCGGTACGAGGACTAGATTTTCACCGCCGTGGATTCATCATGAAAGCTCGAATCGAATTGTTATTTTGTCCTCTATCTTCGCTTTTCTCTGCTTGTTGCTGATTGTTTTAGTTTCCACGACGATTTTGAGGTATAAGTGGTGGAGATCATCCGCCATAGAAGAAGAAGATCCGACCACTCTGTTTCTCAATCGCCAACGTTCAACTAATCTCCTCCCTCCAGTCTTCACTTACGAAGAGCTTGAATCGTCCACGAACCGGTTCGATTCGAAGCGGAAGATCGGAGACGGTGGGTTCGGCTCGGTTTACTTGGGTCAGCTCCACGACGGTAGAATCGTCGCTGTAAAGTTTCTCCACAAGCGCCAAAACGACGCTGCTTCAACCCGCGCCTTTTCCACTAAATCCTTCTGCAACGAAATCCTAATCCTCTCCTCTATCAATCATCCGAATCTCGTCAAACTCCATGGATACTGTAGCGATCCGAGAGGTCTGATCTTAGTCTACGATTACGTCGCAAATGGTAACCTAGCGGATCATCTTCACGGCCCGAAAAGCCTGTATCGAAAGGGGATCTTGACTTGGCCCGTAAGAATCGATATGGCTTTACAAACAGCCATGGCGATGGAGTATCTTCACTTGTCAGTCTCGCCGCCGATCGTTCACAGAGATATCACGTCGGCGAATATTTTCGTCGAGAAAGATATGAGGATTAAAGTCGGCGATTTTGGACTTTCCAGGTTGCTGATTTTTCCCGACAACAATACGTCGTCTTCGTCCGGATATGTTTGGACCGGGCCGCAAGGTACGCCCGGGTATTTGGACCCGGATTATCACCGGTCGTTCCGGTTGACGGAAAAGAGTGACGTATACAGTTTTGGGGTAGTTTTGTTGGAGTTGATTTCTGGGCTTAGAGCGATGGATCAGAGTAGGGATAAGAGAGAGATGGCTCTGGCTGATCTAGTTGTTTCGAAGATCCAAACGGGTCAGCTCCATATGGTCGTGGATTCGGATCTGACGGCTGATAAGGATGTGATGGACGGCGTTTCGGCGGCGGCGGAGCTGGCCTTCCGGTGCGTAGCGGCGGATAAGGACGATCGCCCGGATGCGAAAGAGGTGGTGGAGGAGTTGAGGCGGATCCGAAGCTGTGCACGTGGGTGA 1899 50.18 MPRSPHSHSAATPLAAISIIFFLLTTSSASAHTCSSSASPRSPCPPFTTSPPFPFSFTPGCGHPSFHLSCSSSNTTRRSILTINDLSFSLIAFNTASSTLLLSPLLPPEQTCSQSLFTSIPDRPINLSSSPFRISDASCSRLSFLRPCSPPNLPNCSHCPWQCKLIKNPIHLLHDCGSETNRSISEQGCQGDVLGFLDRILKIGVDIEWDEDQDAYFSSCKDCETKKNGVCGFNSSSPKNDFICFTRSGTRTRFSPPWIHHESSNRIVILSSIFAFLCLLLIVLVSTTILRYKWWRSSAIEEEDPTTLFLNRQRSTNLLPPVFTYEELESSTNRFDSKRKIGDGGFGSVYLGQLHDGRIVAVKFLHKRQNDAASTRAFSTKSFCNEILILSSINHPNLVKLHGYCSDPRGLILVYDYVANGNLADHLHGPKSLYRKGILTWPVRIDMALQTAMAMEYLHLSVSPPIVHRDITSANIFVEKDMRIKVGDFGLSRLLIFPDNNTSSSSGYVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLRAMDQSRDKREMALADLVVSKIQTGQLHMVVDSDLTADKDVMDGVSAAAELAFRCVAADKDDRPDAKEVVEELRRIRSCARG 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7419903 7421801 + Conep19aG0101500.1 Cone19ag0983 459420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0983 632 Gene3D Phosphorylase Kinase; domain 1 311 417 - -
Cone19ag0983 632 FunFam Putative serine/threonine-protein kinase At1g18390 family 311 417 - -
Cone19ag0983 632 ProSiteProfiles Protein kinase domain profile. 335 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0983 632 CDD STKc_IRAK 341 626 - -
Cone19ag0983 632 Gene3D Transferase(Phosphotransferase) domain 1 418 631 - -
Cone19ag0983 632 ProSitePatterns Tyrosine protein kinases specific active-site signature. 466 478 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0983 632 SUPERFAMILY Protein kinase-like (PK-like) 316 623 IPR011009 -
Cone19ag0983 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 30 627 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone19ag0983 632 Pfam Protein kinase domain 336 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0983 632 Pfam Wall-associated receptor kinase galacturonan-binding 49 101 IPR025287 GO:0030247(InterPro)
Cone19ag0983 632 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0983 Cone-Chr19:7419903 Cone2ag0439 Cone-Chr2:2358824 3.51E-78 dispersed
Cone19ag0983 Cone-Chr19:7419903 Cone19ag0348 Cone-Chr19:2850552 2.40E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82403 PF08623 TIP120 7.00E-57 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0983 - - - 0.0