Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag0986 | ATGAACGAAGGGTCGTTTTCGAACGTGAATGTAATTTCGTCGGCGTTTAATCTGGCCGAGATCTGGCAGTTACCGATGAATGGTGGCGATGGCGGTTCTTTGGAGGAATCTGGAGGTGGATTGGGCCTCAGGATGGCCCGATTCGAACACAATTTGGGCCTCCTCGCGGACCTTTCCGGTCCGAATCGAGAAGTTTCGGCCAGCAATCCAATGAGATTGGAGCAGAAAATAGGCCATTGCAGAGCGAGGAGGCAGTTTGATGTAGAAGACGAGTCAGCCAAAGGCGTCTCCACCACTTGCAGCGGCAATGGCGTGAACCAATGCGACGGAAAACGGCTAAAACCATCAACATGTAGAGATGAGAATCGTGAATCCAAAACAGAAGCAGAACCGAGCTCAGGAAAATCTGGGGAACAAATTGGTCGGCTCCCGCCTGAACCACCTAAGCAAGATTACATCCATGTTCGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCTTAGCCGAAAGAGCTAGAAGAGAAAAGATTAGTGAGAGGATGAAGATTCTTCAGGATCTGGTTCCTGGCTGTAATAAGGTTATAGGGAAAGCGCTGGTTCTTGACGAGATAATCAATTACATCCAATCGCTACAGCATCAGGTCGAGTTTCTGTCGATGAAGCTTGAAGCGGTTAATTCCAGAATGTGCCCTACCATTGAAGCATTTCCCTCTAAAGATTTCGATCGACAAACATATGAGACTAGTGGTATGGCTTTTGGCTCACAAGGAACCAGAGAGTATAGTCGTGGCTCTTCACCGGAATGGTTGCATATGCAGCTTGGTGGTGGTTTGGAAAGAACAAGTTAA | 849 | 48.06 | MNEGSFSNVNVISSAFNLAEIWQLPMNGGDGGSLEESGGGLGLRMARFEHNLGLLADLSGPNREVSASNPMRLEQKIGHCRARRQFDVEDESAKGVSTTCSGNGVNQCDGKRLKPSTCRDENRESKTEAEPSSGKSGEQIGRLPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRMCPTIEAFPSKDFDRQTYETSGMAFGSQGTREYSRGSSPEWLHMQLGGGLERTS | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7438204 | 7440389 | + | Conep19aG0101800.1 | Cone19ag0986 | 459423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag0986 | 282 | MobiDBLite | consensus disorder prediction | 113 | 131 | - | - | |
Cone19ag0986 | 282 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 88 | 243 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cone19ag0986 | 282 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 159 | 229 | IPR036638 | GO:0046983(InterPro) | |
Cone19ag0986 | 282 | SMART | finulus | 167 | 217 | IPR011598 | GO:0046983(InterPro) | |
Cone19ag0986 | 282 | Coils | Coil | 208 | 228 | - | - | |
Cone19ag0986 | 282 | CDD | bHLH_AtBPE_like | 151 | 236 | - | - | |
Cone19ag0986 | 282 | Gene3D | - | 158 | 231 | IPR036638 | GO:0046983(InterPro) | |
Cone19ag0986 | 282 | FunFam | Basic helix-loop-helix transcription factor | 158 | 230 | - | - | |
Cone19ag0986 | 282 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 211 | IPR011598 | GO:0046983(InterPro) | |
Cone19ag0986 | 282 | MobiDBLite | consensus disorder prediction | 92 | 106 | - | - | |
Cone19ag0986 | 282 | MobiDBLite | consensus disorder prediction | 91 | 150 | - | - | |
Cone19ag0986 | 282 | Pfam | Helix-loop-helix DNA-binding domain | 165 | 212 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0986 | Cone-Chr19:7438204 | Cone20ag0245 | Cone-Chr20:1087174 | 2.88E-39 | dispersed | |
Cone13ag0995 | Cone-Chr13:8388473 | Cone19ag0986 | Cone-Chr19:7438204 | 7.12E-152 | wgd | |
Cone13ag0099 | Cone-Chr13:612715 | Cone19ag0986 | Cone-Chr19:7438204 | 2.81E-83 | wgd | |
Cone19ag0102 | Cone-Chr19:583082 | Cone19ag0986 | Cone-Chr19:7438204 | 8.41E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45351 | PF01535 | PPR | 0.29 | CL0020 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag0986 | - | - | - | 0.0 |