Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0986 ATGAACGAAGGGTCGTTTTCGAACGTGAATGTAATTTCGTCGGCGTTTAATCTGGCCGAGATCTGGCAGTTACCGATGAATGGTGGCGATGGCGGTTCTTTGGAGGAATCTGGAGGTGGATTGGGCCTCAGGATGGCCCGATTCGAACACAATTTGGGCCTCCTCGCGGACCTTTCCGGTCCGAATCGAGAAGTTTCGGCCAGCAATCCAATGAGATTGGAGCAGAAAATAGGCCATTGCAGAGCGAGGAGGCAGTTTGATGTAGAAGACGAGTCAGCCAAAGGCGTCTCCACCACTTGCAGCGGCAATGGCGTGAACCAATGCGACGGAAAACGGCTAAAACCATCAACATGTAGAGATGAGAATCGTGAATCCAAAACAGAAGCAGAACCGAGCTCAGGAAAATCTGGGGAACAAATTGGTCGGCTCCCGCCTGAACCACCTAAGCAAGATTACATCCATGTTCGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCTTAGCCGAAAGAGCTAGAAGAGAAAAGATTAGTGAGAGGATGAAGATTCTTCAGGATCTGGTTCCTGGCTGTAATAAGGTTATAGGGAAAGCGCTGGTTCTTGACGAGATAATCAATTACATCCAATCGCTACAGCATCAGGTCGAGTTTCTGTCGATGAAGCTTGAAGCGGTTAATTCCAGAATGTGCCCTACCATTGAAGCATTTCCCTCTAAAGATTTCGATCGACAAACATATGAGACTAGTGGTATGGCTTTTGGCTCACAAGGAACCAGAGAGTATAGTCGTGGCTCTTCACCGGAATGGTTGCATATGCAGCTTGGTGGTGGTTTGGAAAGAACAAGTTAA 849 48.06 MNEGSFSNVNVISSAFNLAEIWQLPMNGGDGGSLEESGGGLGLRMARFEHNLGLLADLSGPNREVSASNPMRLEQKIGHCRARRQFDVEDESAKGVSTTCSGNGVNQCDGKRLKPSTCRDENRESKTEAEPSSGKSGEQIGRLPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRMCPTIEAFPSKDFDRQTYETSGMAFGSQGTREYSRGSSPEWLHMQLGGGLERTS 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7438204 7440389 + Conep19aG0101800.1 Cone19ag0986 459423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0986 282 MobiDBLite consensus disorder prediction 113 131 - -
Cone19ag0986 282 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 243 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone19ag0986 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 229 IPR036638 GO:0046983(InterPro)
Cone19ag0986 282 SMART finulus 167 217 IPR011598 GO:0046983(InterPro)
Cone19ag0986 282 Coils Coil 208 228 - -
Cone19ag0986 282 CDD bHLH_AtBPE_like 151 236 - -
Cone19ag0986 282 Gene3D - 158 231 IPR036638 GO:0046983(InterPro)
Cone19ag0986 282 FunFam Basic helix-loop-helix transcription factor 158 230 - -
Cone19ag0986 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983(InterPro)
Cone19ag0986 282 MobiDBLite consensus disorder prediction 92 106 - -
Cone19ag0986 282 MobiDBLite consensus disorder prediction 91 150 - -
Cone19ag0986 282 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0986 Cone-Chr19:7438204 Cone20ag0245 Cone-Chr20:1087174 2.88E-39 dispersed
Cone13ag0995 Cone-Chr13:8388473 Cone19ag0986 Cone-Chr19:7438204 7.12E-152 wgd
Cone13ag0099 Cone-Chr13:612715 Cone19ag0986 Cone-Chr19:7438204 2.81E-83 wgd
Cone19ag0102 Cone-Chr19:583082 Cone19ag0986 Cone-Chr19:7438204 8.41E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45351 PF01535 PPR 0.29 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0986 - - - 0.0