Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0996 ATGAAGATATTGACCATATTCGCAGCTCTTGTTATAGCTTTCTTCTTCTTATTCTGCGTATCTGCACAAGACGATGTAACGTGCCTCGAAGGCGTGAAGAAATCGCTCTCTGACCCGCTCGGAAAACTCAGCTCATGGACCTTTTCTAACTCTTCCGACTCAATCTGCAAGTATGATGGTGCTTCTTGCTGGAACGAGAAGGAGAATCGTCTCATCAGCCTTGAGCTTCCGTCTATGCAGCTCTCCGGTCATTTTCCGGAGTCTCTCCAGTACTGCCGGAGCCTTCAGACGTTAGATCTCTCTAGAAACGAGCTCTTCGGCTCTATTCCTTCACAAATCTGTACCTGGTTGCCTTATCTAGTAACCCTAGATCTTTCCGGTAACCACCTCACTGGTTCGATCCCCGTGGAGATTGTAAACTGTAAGTTCTTGAACAATCTTCTTCTGGATGACAATCAGTTGTCCAGCACAATACCTTACCATCTTGGTCAGCTCGATCGGTTGAAGCGATTGTCCCTCGCGAATAACGATCTTTCTGGTTCGATACCTTCCGATTTATCGAAGTTTGATAAAAGCGATTTCGATGGCAATGGCGGACTCTGTGGACAACCTCTTGGTTCAAAATGTGGTGGATTGAGCTCCAAGAGCCTCGCCACCATCATCGTTGCCGGAGTTGTCAGTGCAGCAGCTTCTCTTCTTTTCGGTTTTGCGCTCTGGTGGTGGTTTCACGTGAAGGCACTTGACAACAAGAGAAAGTTAAGTGGCAGTTACGGTGGAGGAGGTAAAGATAATACTAGTTGGGTCGAGTTGTTGAAATCACACAAGCTTGTTCAGGTCTCTTTGTTTCAGAAACCTATCGTGAAAGTTAAATTATCTGATCTCTTAGATGCTACTAACGATTTTGATTCTGAAAGTATAGTGACCTCAACAAGAACAGGAGTTTCATACAAGGCAGTTCTACCTGATGGTTCTGCTCTCTCAGTGAAGAGGCTTATTTCCTGTAAGCTTACTGAGAAGCAGTTCCGGTCAGAGACGAACAGCTTAGGACAGCTTAGGCATCCGAATTTGGTGCCATTATTAGGGTATTGTATTGTTGAAGATGAAAAGCTTTTGGTTTACAAGCATATGTACAATGGCACATTGTACTCACAATTGCATAAGAGTCTTGATGCTTATACTAGAGATGGTTTTCTGGACTGGTCAACTAGGCTTAAGATCGGACTAGGTGTGGCGGGCGGGCTTTCATGGCTTCACCATGGTTGTAATCCGCCATATATGCACCAGAGCATTAGCTCAAATGTGATTCTTCTTGATGATGATTTTGATGCAAGGGTGACTGATTTTGGCATGGCTAGACTTGTGGGTTCTCGTGATTCTAATGACAGTTCATTTGTGAATGGTGATTTGGGCGAATTCGGGTATATTGCGCCTGAATATTCTAGCACAATGGTTGCTTCCCTCAAAGGGGATGTTTATGGTCTTGGAATTGTGCTTTTGGAATTGATTACTGGGCAGAAACCAACTGAAGTTGGTAATGTTGAGGAGGGGTTTAAAGGTACTTTGGCTGATTGGGTTAATTGGTTGTCAAAAAATGGTCGACCTAGTGATGCTATTGATAAAGTTTTATGTGGGAAAGGTGATGATGAGGAGATTATGCAGTTTCTGAAGGTTGCCTGTAGCTGTGTTGTTTCTAGGCCTAAGGATAGGCCTTCTATGTACCAAGTTTATGAGTCATTGAAGTTCATAGCTGTGAAGTATGGTTTCTCTGAACAGTATGATGTACCTTCTTTGATCTTTGCCAAACAGTAG 1809 43.73 MKILTIFAALVIAFFFLFCVSAQDDVTCLEGVKKSLSDPLGKLSSWTFSNSSDSICKYDGASCWNEKENRLISLELPSMQLSGHFPESLQYCRSLQTLDLSRNELFGSIPSQICTWLPYLVTLDLSGNHLTGSIPVEIVNCKFLNNLLLDDNQLSSTIPYHLGQLDRLKRLSLANNDLSGSIPSDLSKFDKSDFDGNGGLCGQPLGSKCGGLSSKSLATIIVAGVVSAAASLLFGFALWWWFHVKALDNKRKLSGSYGGGGKDNTSWVELLKSHKLVQVSLFQKPIVKVKLSDLLDATNDFDSESIVTSTRTGVSYKAVLPDGSALSVKRLISCKLTEKQFRSETNSLGQLRHPNLVPLLGYCIVEDEKLLVYKHMYNGTLYSQLHKSLDAYTRDGFLDWSTRLKIGLGVAGGLSWLHHGCNPPYMHQSISSNVILLDDDFDARVTDFGMARLVGSRDSNDSSFVNGDLGEFGYIAPEYSSTMVASLKGDVYGLGIVLLELITGQKPTEVGNVEEGFKGTLADWVNWLSKNGRPSDAIDKVLCGKGDDEEIMQFLKVACSCVVSRPKDRPSMYQVYESLKFIAVKYGFSEQYDVPSLIFAKQ 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7471069 7473350 - Conep19aG0102800.1 Cone19ag0996 459433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0996 602 Gene3D Phosphorylase Kinase; domain 1 261 375 - -
Cone19ag0996 602 ProSiteProfiles Protein kinase domain profile. 301 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag0996 602 Gene3D Transferase(Phosphotransferase) domain 1 376 593 - -
Cone19ag0996 602 Pfam Protein tyrosine and serine/threonine kinase 328 579 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag0996 602 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 376 601 - -
Cone19ag0996 602 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Cone19ag0996 602 SUPERFAMILY Protein kinase-like (PK-like) 277 582 IPR011009 -
Cone19ag0996 602 SUPERFAMILY L domain-like 20 197 - -
Cone19ag0996 602 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Cone19ag0996 602 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Cone19ag0996 602 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Cone19ag0996 602 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Cone19ag0996 602 Gene3D Ribonuclease Inhibitor 22 211 IPR032675 -
Cone19ag0996 602 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 22 210 - -
Cone19ag0996 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 56 580 IPR051564 GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1340 Cone-Chr18:9262250 Cone19ag0996 Cone-Chr19:7471069 5.59E-232 dispersed
Cone19ag0996 Cone-Chr19:7471069 Cone3ag0598 Cone-Chr3:2962451 7.83E-145 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone19ag0996 Cone-Chr19:7471069 4.04E-227 wgd
Cone13ag1003 Cone-Chr13:8424072 Cone19ag0996 Cone-Chr19:7471069 0 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone19ag0996 Cone-Chr19:7471069 9.62E-210 wgd
Cone16ag0117 Cone-Chr16:675259 Cone19ag0996 Cone-Chr19:7471069 3.03E-09 wgd
Cone19ag0996 Cone-Chr19:7471069 Cone2ag0165 Cone-Chr2:885313 8.69E-214 wgd
Cone19ag0996 Cone-Chr19:7471069 Cone7ag0571 Cone-Chr7:2740711 1.21E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82404 PF13410 GST_C_2 8.00E-06 CL0497 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0996 - - - 0.0