Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0999 ATGAAGAGGTCCAGAGAAGATGTTTATGTGGGTCCACAACTCAAGCGGCCTATGGTTTCTTCTACTCGGGGGGAAGCCTCCGGACAATCTCAAATGATGGGAGGAGGAAGTGCACAAAAACTAACGACAAATGATGCCCTGGCTTATCTTAAAGCTGTAAAGGACATTTTTCAAGACAAAAAAGAAAAATATGAAGACTTCCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGAATTGATACTGGGGGAGTCATTGCCAGGGTAAAAGAATTATTTAAAGGGCACAGGGAGCTAATTTTGGGCTTCAATACCTTTTTGCCGAAAGGATATGAGATTACTCTTCCGCTTGAGGAAGAACAACCTCCACAAAAAAAGCCTGTTGAATTCGATGAAGCTATTAATTTTGTGAACAAGATTAAGACACGTTTTGTTGGTGATGATCATGTCTATAAAGCATTTTTAGACATTTTGAACATGTACAGAAAGGAAAACAAGTCCATCAGTGAGGTCTATCAGGAGGTCGCTGCACTTTTCCAAGGCCACCCAGACCTTCTTGTGGAGTTCACTCATTTTCTACCCGATTCTTCGTCCACAGCCTTTGTGCAGTATAATCCTGGTAGGAATTCTATGCTTCGTGATAGGAGTTCTTCCGTGCCCCCCATGCGGCATATGTATGTCGACAAGAAAGAAAGGAATTTTCCTTCGCATAATGACCGTGACCTTAGTGTTGACCGTCCTGAGCCTGACCATGATAGAACCATGATGAAAGCAGAAAAAGAGCAACGGAGGCGTGGTGATAGAGATAAAGACAGGAGGGAAGACAGAGATAGGAGAGAACGTGATCGGGATAGGGACGATAGAGACTATGAGCATGACACTAAGGACTTCAGTATGAATCGTTTCACGCATAAGAGGAAATCTGCTCGTAGGATAGAAGATATGGCTGGCGAACAATTTCATCAAGGCGTGGAAGGTGATGAGAACTTGGGGATCCATCCTGTGTCATCCTCTTATGACGATAAAAGTTCTGCAAAAACAGGTATGTACATCCAAGAATTTGCATTTTGTGAAAAGGTGAAAGAGAAGCTGCGGAATGCAGAGGATTACCAGGAATTTTTAAAGTGCCTCCATATCTATAGCAAGGAGATAATTACACGAGCAGAGCTGCAGTCTTTGGTGGGAGACTTGCTTGGAAGATATCCAGATCTTATGGACGGATTCAATGAGTTTTTGTCACGTTGTGAGAAGAATGATGGATTTCTTGCTGGGGTCATGAGTAAAAAATCCTTGTGGAATGAAGGAAGTCTACCTCGATCTGCCAAGGTTGAGGATAGAGACAGAGATCGAGATTGGGAGAGGGAAGATGGGGTTAAAGATAGAGACCGTGACCACCGAGAAAGGGATAGACTTGACAAAAGCATTAGTAAAGATGCTGGAGGTCACAAAATGTCTTTATTGCCTAGCAAAGACAAGTATCTGGGAAAGCCTATTAATGAACTTGACCTCTCAAACTGTGAGCGATGTACCCCCAGTTATCGTTTACTGCCAAAGAATTATCCAATACCTTCTGCTAGCCAAAGAACAGATCTAGGTGATCAAGTATTGAATGATCATTGGGTCTCTGTCACTTCTGGAAGCGAGGATTACTCGTTTAAACACATGCGCAAAAACCAATACGAAGAAAGCCTGTTTCGATGTGAAGATGACAGGTTCGAATTGGACATGCTTTTGGAGTCTGTCAATATATCTACCAAGCGTGTTGAAGAATTATTAGAGAAGTTCAACAACAATTCAATCAAACCAGAAAGTCCAACCCTCGTGGAGGATCACTTCACAGCTCTGAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTCGATGTGATGGATGTGCTCAGGAAGAATGCACCGCTTGCTTTGCCAGTTATATTAACCCGCTTGAAGCAGAAACAAGAAGAGTGGACACGGTGCCGTTCTGACTTCGATAAAGTTTGGGCCGAAATATATGCTAAGAATTATCACAAATCACTTGACCATCGGAGCTTCTACTTCAAGCAACAAGATACAAAGAGCTTGAGCACAAAAGCGTTATTGGCAGAGATCAAGGAGATCAGTGAAAAGAAGCAGAAGGAAGATGATGTGCTGCTTGCGACTGCTGCTGGAAATCGACGACCGTTAATTCCTAATTTGGAATTTGGGTACTCTGATCCTGATATTCATGAAGATCTCTATCAGCTCATTAAATATTCTTGTGGAGAAATTTGCACAACTGAGCAATTGGATAAAGTTATGAAGATTTGGACAACCTTTCTAGAACCCATGCTTGGCGTTCCTTCCCGACCTCTAGGTGCTGAAGACACTGAAGATGCTGTTAAGGCAAAGAGTCATGCTGTTAAAGGTGGTGGTCCAAGTGTGGCAGAGAGCGATGGAAGTCCTGGTCAGATTGCTACTGTCGTGAATTCCAAACAGTTAAATACATCAAGAAATAGTGATGGAAGTGCTCCACCTGAACAATCAAGTTCTTGTAGGACCTGGCCTGCAAATGGCGATAATGGGGTGAAAGAAGATAGTTCCCATGATGCTGACATTGCACACAAGAGTGATGCCTTATGCAATAATCCTCAGCAAGGAAGAGTTCAGAATAATGTCTCTACAGCTGATGATTTGTCAGCAGTCAGCAAACCTGACAATTGCAGTGAACGTTTGGTCAACTCAAATGTATCACTTATGGCAGTTGTGGAGCAAATGAATGGGAAAACTAACCTAGAAAATACATCAGGTTTGAGTACTACGCCTTCAAGACCTGGAAATGGTACTCTTGATCGGCTTGAGGTTGGTGATTCAACAAAACCAGTAATATCCTCAAATGGGGCAACCGTAGAGGGTAACAAAAATAGTAGATATAACAAAGAATCAGGACACTTCAAGATAGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGACTTTGAGGATAACTCTGCAAATTATGGAGAGGCTGGTTTTGAGGCTGTGAACAAAGCAAAGGGTACTTCTACAGGTAAGCAATTTCCAAGCACACATGGAGAGGAAGAGTTGCGATGCAGGGAAGCTGGTGGAGAGAATGATGCTGATGATGAAGGGGAGGAGAGTGCTCAGAGATCATCAGAGGACAGTGAAAATGCTTCCGAGAACGGGGATGTTTCTGGAAGTGAGTCTGGAGATGGTGAGGATTGTTCTCGGGAAGATCAAGAGGGAGATGGGGACCATGATGCACTTGACAATAAAGCTGAGAGTGAAGGTGAGGCCGAGGGTATGGCAGATGCTCATGATGTGGAAGGAGATGAAGCATCTATACCCTTTTCAGAACGTTTTCTACGTACTGTGAAGCCTCTTGCGAAGCATGTTCCTCCATCGCTGTATGAAAAAGATAGGGATTCTCGTATCTTTTATGGGAATGACTCTTTCTACGTGCTTTTTAGGCTTCATCAAACCTTGTATGAGAGAATACAGTCAGCAAAGATTAATTCATCTTCTGCTGAGAGGAGGTGGAGGGCTTCAAATGATACGACCCCTACCGTTCTATACGCCAGGTTTATGAATGCACTTTACAACTTGCTTGATGGTTCTTCCGACAATACAAAATTTGAGGATGATTGCCGAGCTATTATTGGAACTCAGTCATATGTTCTATTTACGTTGGACAAGCTGATTTACAAACTTGTTAAACAGCTTCAAACCATTGCCACAGATGAGATAGATAACAAGCTTCTACAACTTCATGCGTATGAAAAGATAAGAAAACCCGGAAGATTTGTTGATGCTGTCTATCAAGAAAATGCCCGTGTACTTCACGATGAGAGCATATATCGCATCGAATGTACTTCTGCACCAACTCGTCTAACAATTCAGCTCATGGACTATGGCCATGACAAGCCTGAAGTGACTGCTGTTACCATGGACCCGAATTTTTCAGCTTATCTGCACAATGACTTTCTCACAGTTCTTCCCGATAAAAAAGAGAAGCATGGAATATTTATGCAGAGAAGTAAACGCAAAAGAGTGACATATGGCGATGAAATTTCTTCTGAATTGGAAGCCATGAAAAGACTTTCCATAGCCAATGGTCTGGAGTGTAAGATAGCTTGCGGTTCATCAAAGGCATCATATGTTCTAGATACGGAGGACTCCTTGCTTGGAGGGAGAAAACGGCAGTTTCTGAACAGAAGTAGTTCAGGCCCTCATGAACCATACCACCCGGTGACTCCACAGGATCATCCAAAAAAGTTAGAGCGGTTTCACAGATTTCTCGAAAGATCATGA 4308 42.71 MKRSREDVYVGPQLKRPMVSSTRGEASGQSQMMGGGSAQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRIDTGGVIARVKELFKGHRELILGFNTFLPKGYEITLPLEEEQPPQKKPVEFDEAINFVNKIKTRFVGDDHVYKAFLDILNMYRKENKSISEVYQEVAALFQGHPDLLVEFTHFLPDSSSTAFVQYNPGRNSMLRDRSSSVPPMRHMYVDKKERNFPSHNDRDLSVDRPEPDHDRTMMKAEKEQRRRGDRDKDRREDRDRRERDRDRDDRDYEHDTKDFSMNRFTHKRKSARRIEDMAGEQFHQGVEGDENLGIHPVSSSYDDKSSAKTGMYIQEFAFCEKVKEKLRNAEDYQEFLKCLHIYSKEIITRAELQSLVGDLLGRYPDLMDGFNEFLSRCEKNDGFLAGVMSKKSLWNEGSLPRSAKVEDRDRDRDWEREDGVKDRDRDHRERDRLDKSISKDAGGHKMSLLPSKDKYLGKPINELDLSNCERCTPSYRLLPKNYPIPSASQRTDLGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNISTKRVEELLEKFNNNSIKPESPTLVEDHFTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWTRCRSDFDKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKQKEDDVLLATAAGNRRPLIPNLEFGYSDPDIHEDLYQLIKYSCGEICTTEQLDKVMKIWTTFLEPMLGVPSRPLGAEDTEDAVKAKSHAVKGGGPSVAESDGSPGQIATVVNSKQLNTSRNSDGSAPPEQSSSCRTWPANGDNGVKEDSSHDADIAHKSDALCNNPQQGRVQNNVSTADDLSAVSKPDNCSERLVNSNVSLMAVVEQMNGKTNLENTSGLSTTPSRPGNGTLDRLEVGDSTKPVISSNGATVEGNKNSRYNKESGHFKIEREEGELSPNGDFEDNSANYGEAGFEAVNKAKGTSTGKQFPSTHGEEELRCREAGGENDADDEGEESAQRSSEDSENASENGDVSGSESGDGEDCSREDQEGDGDHDALDNKAESEGEAEGMADAHDVEGDEASIPFSERFLRTVKPLAKHVPPSLYEKDRDSRIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERRWRASNDTTPTVLYARFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTIATDEIDNKLLQLHAYEKIRKPGRFVDAVYQENARVLHDESIYRIECTSAPTRLTIQLMDYGHDKPEVTAVTMDPNFSAYLHNDFLTVLPDKKEKHGIFMQRSKRKRVTYGDEISSELEAMKRLSIANGLECKIACGSSKASYVLDTEDSLLGGRKRQFLNRSSSGPHEPYHPVTPQDHPKKLERFHRFLERS 1435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7482066 7491433 + Conep19aG0103100.1 Cone19ag0999 459436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 225 291 - -
Cone19ag0999 1435 FunFam Paired amphipathic helix protein SIN3 342 416 - -
Cone19ag0999 1435 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 436 486 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 1 38 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 1078 1103 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 922 939 - -
Cone19ag0999 1435 FunFam Paired amphipathic helix SIN3-like protein 124 195 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 969 988 - -
Cone19ag0999 1435 Gene3D Paired amphipathic helix 123 196 IPR036600 GO:0006355(InterPro)
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 438 478 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 20 38 - -
Cone19ag0999 1435 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 Pfam Paired amphipathic helix repeat 367 411 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 SUPERFAMILY PAH2 domain 351 414 IPR036600 GO:0006355(InterPro)
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 1403 1423 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 951 968 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 779 861 - -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 1022 1036 - -
Cone19ag0999 1435 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355(InterPro)
Cone19ag0999 1435 ProSiteProfiles PAH domain profile. 344 414 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 Pfam Sin3 family co-repressor 506 598 IPR013194 -
Cone19ag0999 1435 SMART hdac_interact2seq4b 504 604 IPR013194 -
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 812 849 - -
Cone19ag0999 1435 PANTHER SIN3B-RELATED 37 1404 IPR039774 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0000785(PANTHER)|GO:0003714(InterPro)|GO:0003714(PANTHER)
Cone19ag0999 1435 MobiDBLite consensus disorder prediction 922 1103 - -
Cone19ag0999 1435 SUPERFAMILY PAH2 domain 121 194 IPR036600 GO:0006355(InterPro)
Cone19ag0999 1435 FunFam Paired amphipathic helix protein Sin3 45 107 - -
Cone19ag0999 1435 Pfam C-terminal domain of Sin3a protein 1145 1392 IPR031693 -
Cone19ag0999 1435 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355(InterPro)
Cone19ag0999 1435 SUPERFAMILY PAH2 domain 38 108 IPR036600 GO:0006355(InterPro)
Cone19ag0999 1435 Gene3D Paired amphipathic helix 343 416 IPR036600 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0999 K11644 - - csv:101208532 2049.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1341 Cone-Chr18:9267886 Cone19ag0999 Cone-Chr19:7482066 0 dispersed
Cone19ag0999 Cone-Chr19:7482066 Cone8ag0633 Cone-Chr8:6249814 2.48E-75 dispersed
Cone11ag0139 Cone-Chr11:619864 Cone19ag0999 Cone-Chr19:7482066 0 wgd
Cone12ag0617 Cone-Chr12:5512424 Cone19ag0999 Cone-Chr19:7482066 0 wgd
Cone13ag1005 Cone-Chr13:8435599 Cone19ag0999 Cone-Chr19:7482066 0 wgd
Cone19ag0999 Cone-Chr19:7482066 Cone8ag0632 Cone-Chr8:6248383 8.13E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45352 PF03094 Mlo 9.60E-76 No_clan Cone TR