Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1000 ATGTCAGTTTCTCACTTGAAACCTCACTTCTCCGATGCTGACTATGACGACGAAGATGTGGCCGCCGAAGAGTATGAGGATGTTTCTGCCGATCTATCGGAGGAAGTTGATCAGAGCGACGATGAGGAAGACGAATTATCAGTGGAACCTGCGGCGGAGACTTCTACTCTGCGCGAGGAGCTGAAGTGGCAGAGAGTTGAATATCTGGTCAAGGAAGTCAGAGAATTCGGTGGAGAAATCGTCGATGTTGATGAACTGTCTTCTATTTACAGTTTCCGGATCGATAAATTTCAGGTCACATTCTTGAGAGGATCCTCGGTGGTGGTATCGGCGCCAACAAGCAGTGGAAAGACTTTATTTGCAGAAGCTGCTGCTGTTGCCACAGTAGCCAGGAAAAAGCGATTATTCTACACTACTCCACTTAAGGCATTGTCTAATCAGAAGTTTTACGAATTTCGTGAGACATTTGGAGACAGCTATGTTGGACTTCTTACAGGAGATTCTGCAGTTACTGAAGATGCTCCTATTCTAATTATGACCTCTGAAATTTTGCGGAACATGTTGTATCAGAAGTATAGATTATGTTCTATCCTGGATGATAATAGTTCATGTGTTTGTATGATACCCTTGAGGATGTTTTTAGTATATTTGTTATGTGTTGGGATGGCTTCTTCTGGAACTGGACTTTTCAATGTTGATGTGATAGTTTTGGATGAAGTTCATTATCTTAGTGATATATCTCGGGGTACAGTGTGGGAAGAAATTGTGCTGAAGAATGCTGCAAGCTTCTGTTTGCTGGAGTAG 804 42.66 MSVSHLKPHFSDADYDDEDVAAEEYEDVSADLSEEVDQSDDEEDELSVEPAAETSTLREELKWQRVEYLVKEVREFGGEIVDVDELSSIYSFRIDKFQVTFLRGSSVVVSAPTSSGKTLFAEAAAVATVARKKRLFYTTPLKALSNQKFYEFRETFGDSYVGLLTGDSAVTEDAPILIMTSEILRNMLYQKYRLCSILDDNSSCVCMIPLRMFLVYLLCVGMASSGTGLFNVDVIVLDEVHYLSDISRGTVWEEIVLKNAASFCLLE 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7493977 7495225 - Conep19aG0103200.1 Cone19ag1000 459437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1000 267 MobiDBLite consensus disorder prediction 1 53 - -
Cone19ag1000 267 Coils Coil 22 42 - -
Cone19ag1000 267 MobiDBLite consensus disorder prediction 16 49 - -
Cone19ag1000 267 Gene3D - 53 266 IPR027417 -
Cone19ag1000 267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 267 IPR014001 -
Cone19ag1000 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cone19ag1000 267 Pfam DEAD/DEAH box helicase 101 256 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone19ag1000 267 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 33 259 IPR050699 GO:0003724(PANTHER)|GO:0006401(PANTHER)|GO:0055087(PANTHER)|GO:0070478(PANTHER)
Cone19ag1000 267 SMART ultradead3 90 267 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1000 K26077 - - mdm:103402965 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1000 Cone-Chr19:7493977 Cone3ag0891 Cone-Chr3:4591311 7.29E-22 dispersed
Cone13ag1006 Cone-Chr13:8445183 Cone19ag1000 Cone-Chr19:7493977 7.13E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054855 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1