Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1009 ATGGAGGTATCTTGGTCCGACTGCTTCTCCGATTTACTCTGTGACGAGGAATCCTCTGAAATATTGTCCGAAGAGTCACCGGAATGTTCTTCGGACCTCGAGTCTCCGGCGTACGTAGAGGAATCCATCGCCGGATTCATCGAAGACGAGAGGCACTTCGTGCCTGGTTTCGATTATTTGTGCCGATTTCAGTCCCAATCTCTGGACGAATCCGCTAGAGCAGAATCCGTCGCATGGATTCTCAAGGTCCAAGCTTACTTCGGTTTTCAGCCCCTAACGGCTTATCTATCCGTCAACTACTTGGATCGGTTCCTTTATTATCGCAGCTTCCCGCAAACTAATGGCAACGGGTGGCCCCTGCAACTTCTCTCTGTTGCTTGCTTGTCGCTAGCAGCTAAAATGGAGGAGCCTCTTGTTCCATCTTTATTGGATCTTCAGGTTGAGGGACCAAAGTACATATTTGAACCTAGAACGATATGTCGGATGGAGTTTCTTGTGCTCGGAGTGTTAGGATGGCGGCTCCGATCGGTTACACCATTTAACTTCATCGATTTCTTTGCATGCAAGCTCGATTCATCTGGAGCTTTTATCGGGTTCTTAATTTCCCGAGCCACAGAAATTATCTTATCGAATATACGAGAGGCCAGCTTTGTTGAATACTGGCCCTCATGCATAGCTGCCTCTGCCTTGCTTAGTGCCGCAAGTGAAATTCCAAATTTGTCCCTTGTTAACCCGGACCATGCTGAATCATGGTGCAATGGGCTTAGCAAAGAAAAGATAATTGGATGCTACCGGTTAATGCAAGATTTTGTACTCGACAGTAACCGGAGGAAGGCCCCGAAATTCTTACCACAGCTCCGAGTCACAATCCGGGCTAGGATGAGCTCCACTACTGACTCATTATCATCCTCTTCCTCTTCTTCATCCACATCATCTATTAAAAGGAGAAAATTAAACAACTGCTTATGGGTAGATGATGACAAAGGAAATTCTGAGTGA 999 46.55 MEVSWSDCFSDLLCDEESSEILSEESPECSSDLESPAYVEESIAGFIEDERHFVPGFDYLCRFQSQSLDESARAESVAWILKVQAYFGFQPLTAYLSVNYLDRFLYYRSFPQTNGNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGPKYIFEPRTICRMEFLVLGVLGWRLRSVTPFNFIDFFACKLDSSGAFIGFLISRATEIILSNIREASFVEYWPSCIAASALLSAASEIPNLSLVNPDHAESWCNGLSKEKIIGCYRLMQDFVLDSNRRKAPKFLPQLRVTIRARMSSTTDSLSSSSSSSSTSSIKRRKLNNCLWVDDDKGNSE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7532746 7535602 + Conep19aG0104100.1 Cone19ag1009 459446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1009 332 Pfam Cyclin, C-terminal domain 177 280 IPR004367 -
Cone19ag1009 332 SUPERFAMILY Cyclin-like 159 281 IPR036915 -
Cone19ag1009 332 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Cone19ag1009 332 PANTHER CYCLINS 26 275 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone19ag1009 332 FunFam D2/4-type cyclin 56 175 - -
Cone19ag1009 332 Gene3D - 56 175 - -
Cone19ag1009 332 SUPERFAMILY Cyclin-like 34 174 IPR036915 -
Cone19ag1009 332 CDD CYCLIN_AtCycD-like_rpt2 177 267 - -
Cone19ag1009 332 SMART Cyclin_C_2 177 309 IPR004367 -
Cone19ag1009 332 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Cone19ag1009 332 SMART cyclin_7 78 168 IPR013763 -
Cone19ag1009 332 Gene3D - 47 238 - -
Cone19ag1009 332 CDD CYCLIN_AtCycD-like_rpt1 72 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1189 Cone-Chr17:8708758 Cone19ag1009 Cone-Chr19:7532746 3.90E-53 dispersed
Cone19ag1009 Cone-Chr19:7532746 Cone3ag1037 Cone-Chr3:29188468 2.19E-58 dispersed
Cone12ag0627 Cone-Chr12:5632982 Cone19ag1009 Cone-Chr19:7532746 1.50E-139 wgd
Cone13ag1015 Cone-Chr13:8489773 Cone19ag1009 Cone-Chr19:7532746 5.78E-220 wgd
Cone19ag1009 Cone-Chr19:7532746 Cone8ag0642 Cone-Chr8:6340215 1.42E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1009 K18810 - vvi:100255261 475.707