Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1014 ATGCTGCCAGCGGCGAAGAAGAAGCGAGATACTGTTACTGATCAGGAGAAGACTGCGAAATTGATGAGTAACATTTCGGAACTGTTGAAGAAGGGAGATGATTTCAATCCTGAATCAGTTGCATGCTGGAACAAAGGGGAACGAGTTCCGTTTCTATTTCTTAGCTTAGCTTTCGATTTGATTTCAAACAACTCAAGCGAAATAGTGATTACTGATATAGTGTGTAATACATTGAGGACTATAATCTATACTACATCCGATGATCTACTGGCCGCTGTTTATTTATTGGCTACTAAGATAGCGCCCTCACATGAAGGTTTAGAGTTAGGATTTGGGGATGCTTTGATTACAAAATTTATCGCTGAGACTTTTGGAGAAACTGAAGTGCATGTTCAAAAGCGATACAAGATATTGGGTGATTTGGGTCTCGTTGCACAAGCCTTCGCCAAGCAGTCCCGTTGCACAAACAAGCTGGCATATATGATGCGTAAACCTGATGCATTAACTGTCTTCGGAGTGTTTGACAGATTTCGGATAATTGCCAAGGAATCCGGTAATGGTAGTCAAAAGAACAAGAAGAACCATATCAAGTCACTTCTTGTTGCTGCCACTGAGTGTGAACCTCTCTATCTCGTTCGAGTGCTACAGAGGAAGTTGCGAATTCGATTGGGTGAGGAGACTGTTTTAGCTGCACTGGGGCAAGCTGTTGTATATGCAGAAAAACACTCTACTCCACCTCTTCAATCTTCTTTAGAGGAGGCTGCAACTATTGTTAAGCAAGCATACTCTGTACTTCCGGTTTATGATAAAATAGTCCCTGCCCTTCTCACTGGTGGCGTGTGGAATCTCCCAACAGCATGTACCCTTACACCTGGTATTCCAGTTGGACCTATGCTCGCCAAACCAACCAAGGCGATGGCTGAGATCCTTAAAAAATTACAGGATGCAGAATTTACTTGTGAATACAAGTATGATGGCGAGCGGGCCCAGATACATTATATGGAGAACGGTTCAGTTGAGATATACAGTCGAAATGGTGAACGAAATACCGGAAAGTTTCCTGATGTTGTCATTGCAGCGTCAAGGTTAAAGAAACCGACTGTAACATCATTTATTTTGGATTGTGAAGTTGTTGCTTATGATCGTCAAGAAAAAAGGATTCTGCCTTTCCAGGTCCTCATTGAGAAACAACTGAAAGTTCGTAGAGAGCGCCTTTACGACTCTTTTGTGGAAGAACCTGGTTATTTTCAGTTTGCAACAGCCATAACAACAAATGATCTTCAAGAGATGCAGGAGTTTCTTGACATTTCTGTTAATCAGCGTTGTGAGGGTTTGATTATCAAGACATTGGATAGAGATGCTACCTACGAGCCATCCAAGCGGTCGCTTAGCTGGTTAAAGTTGAAAAAGGATTACATTCATAATACAGGGGACTCACTAGATCTGGTACCAATTGGTGGTTTTTATGGCCAAGGGAAACGGACAGGTATCTATGGAAATTTTCTCCTTGCATGTTATGATAAGGTCAATGAAGAATTTCAGAGCATTTGCAAGATAGGAAGTGGGTTCTCGGAAAAAATGCTCGAAACGCTTTCTGCTAGTCTCCATTCTAAAGTGATTCCAGTACCAGAGCCGGACTTTCGGTGTGGAGCAATTAGTCCAAATCCAGATATATGGTTCAAACCCAGTGAGGTTTGGGAGGTTAAATCTGCAAACTTAACCATTAGCCCTGTATATAAAGCGGCAGTGGGCATTGTGGATGACGATAAGGGCATTTCTCTTCGCTTTCCCCGTCTTGTCCGTGTAAGACATGACAAGACCCCATTGGAAGCCTCATCATCTGAGCAGGTTGCGGCTATGTATGATGCTCAAGGCAATGAATGA 1884 42.62 MLPAAKKKRDTVTDQEKTAKLMSNISELLKKGDDFNPESVACWNKGERVPFLFLSLAFDLISNNSSEIVITDIVCNTLRTIIYTTSDDLLAAVYLLATKIAPSHEGLELGFGDALITKFIAETFGETEVHVQKRYKILGDLGLVAQAFAKQSRCTNKLAYMMRKPDALTVFGVFDRFRIIAKESGNGSQKNKKNHIKSLLVAATECEPLYLVRVLQRKLRIRLGEETVLAALGQAVVYAEKHSTPPLQSSLEEAATIVKQAYSVLPVYDKIVPALLTGGVWNLPTACTLTPGIPVGPMLAKPTKAMAEILKKLQDAEFTCEYKYDGERAQIHYMENGSVEIYSRNGERNTGKFPDVVIAASRLKKPTVTSFILDCEVVAYDRQEKRILPFQVLIEKQLKVRRERLYDSFVEEPGYFQFATAITTNDLQEMQEFLDISVNQRCEGLIIKTLDRDATYEPSKRSLSWLKLKKDYIHNTGDSLDLVPIGGFYGQGKRTGIYGNFLLACYDKVNEEFQSICKIGSGFSEKMLETLSASLHSKVIPVPEPDFRCGAISPNPDIWFKPSEVWEVKSANLTISPVYKAAVGIVDDDKGISLRFPRLVRVRHDKTPLEASSSEQVAAMYDAQGNE 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7567874 7572886 - Conep19aG0104600.1 Cone19ag1014 459451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1014 627 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 259 471 - -
Cone19ag1014 627 Gene3D DNA ligase/mRNA capping enzyme 396 419 - -
Cone19ag1014 627 FunFam DNA ligase 474 627 - -
Cone19ag1014 627 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 34 287 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone19ag1014 627 Gene3D - 28 296 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone19ag1014 627 NCBIfam ATP-dependent DNA ligase 393 621 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cone19ag1014 627 Pfam DNA ligase N terminus 50 232 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone19ag1014 627 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 10 396 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cone19ag1014 627 Pfam ATP dependent DNA ligase domain 297 394 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone19ag1014 627 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 321 329 IPR016059 GO:0003909(InterPro)
Cone19ag1014 627 ProSiteProfiles ATP-dependent DNA ligase family profile. 361 507 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone19ag1014 627 CDD OBF_DNA_ligase_I 477 621 - -
Cone19ag1014 627 Gene3D - 474 627 IPR012340 -
Cone19ag1014 627 Gene3D DNA ligase/mRNA capping enzyme 297 395 - -
Cone19ag1014 627 ProSitePatterns ATP-dependent DNA ligase signature 2. 443 469 IPR016059 GO:0003909(InterPro)
Cone19ag1014 627 CDD Adenylation_DNA_ligase_I_Euk 286 472 - -
Cone19ag1014 627 SUPERFAMILY Nucleic acid-binding proteins 477 624 IPR012340 -
Cone19ag1014 627 Gene3D - 420 473 - -
Cone19ag1014 627 Pfam ATP dependent DNA ligase C terminal region 495 606 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0299 Cone-Chr11:1458296 Cone19ag1014 Cone-Chr19:7567874 2.87E-130 dispersed
Cone19ag1014 Cone-Chr19:7567874 Cone6ag0127 Cone-Chr6:620319 5.39E-230 dispersed
Cone19ag1014 Cone-Chr19:7567874 Cone1ag0493 Cone-Chr1:4814028 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1014 K10747 - csv:101213447 856.67