Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1018 ATGGGTAAGAAGAAGGATTTTCTGATTCTGGGTCTGACTCTTTTCATGCTTTCTGGAGCTGTGTCGTCATCAGCTATAACCACTCCACCTGCAAAGATCGTTAGTGGGGTCTTCTCAAATGCTGCATCGATGCTTATGAAACGCTTATGGTCGCTCAAAGCAACTACCAAAACAGCAATTACTGGCCGTCCGTTGATGAAGTTCGAGAGCGGTTACACAGTGGAGACTGTGTTTGATGGGAGCAAGCTTGGCATTGAGCCTTACTCCGTCGAGGTGTTGCCTAATGGGGATCTTCTCATTCTTGACTCTGCTAATCACAACATTTACAGGATGTCTTCTTCTCTCTCTCTCCATAGCAGACCAAAGCTGATTGCCGGATCTGGTGAGGGATACTCCGGGCATGTAGATGGGAAGCCCAGAGAGGCAAGGATGAACCAACCAAGGGGACTTGCCGTAGATGATAGAGGCAATATTTACATTGCTGACACTATGAATTCTGCTATCAGGAAGATAAGTGATGCCGGGGTTACGACGATTGCAGGCGGGAAATGGGGCCGAGGCAGGGTTCACGTCGATGGGCCAAGTGAAGATTCCAAGTTCTCTAACGATTTTGACGTGGTTTACATTGGAAGTAGTTGCTCTCTACTAGTCATAGACCGAGGAAACCGTGCTATTAGAGAGATCCAACTCCGTTTCGACGACTGTGCTTATCAATATGGAAATGGGTTTCCTTTTGGAACTGCAGTGCTTGTAGCAGCTGGTTTCTTTGGTTACCTTCTGGCTTTGCTTCAACTCCGAGTGGGTTCATCATCTTCTCCTAACGTTCAAGCTTCATTAAAGACGAGCAATATCTCAAGCTCATATGAAAAGCCTCTGAAATCAACCCGGCCACCTTTAATCCCGACAGAAGATGAGCCAGAGAAGCAGGAAACTTTCATTGGTTCCATAACCAGGCTTCTCAGTACTGCCTGGGGATCTGTCATGGAAATTCTGGGAGGGGTATTTCCAGGATTGAAAAGAAACCCAGTAGGGGTAAACTACCAAGATCAGCTATATGAAGAAAAGCATTCAAATTCTTGCCCAGTTCAGGAAAGTTTTGTGATTCCAGACGAAGATGAACCGCCTCCCCCTTCGATTGAAACCCGGACCCCTACTCCTAGAAAGACTTATGCCTTCATGTCAAAAAGTGCGGAAAAAATGCAGCAGTTAAGGCAGAGCAGGGCTTTCTATAGTGGATTGGATAGTGATTTATTACTACAACAACAACAAAAACAAAGACTACAAAAACCACAACAGCAGCATTATCATCAAAGGTCTCATTCATCGATTCCGTATACCTATTATGAGAAGAGCCATGAGAAAATTGACGAGATTGTTTTTGGGGCAGTTCAGGAACAAGATGGGAGGCAAGACAAGGTTGTCATAAAGCCGGTTGATTATGGAGGAAGAAGGAGAAGAAGAAGAGCACGAACATTTTTCTTCATTTCAGACAACCTACCATATACTGTCAGATCCAAAATCACCCCTTCGTTGTCCCTCAGATCTCGCTGGAAACTAGTTCGGATCTCAGATTTGGTGCTTCAACTAACCGGTAAATATCTCTTTGCTGGAATTACAGACGCGGTGCTCACTTTTCTGGTGTTTGATAGCTTACTGTACTCGGTTTCCGCTTGGATCTGTCTGAGCTTTCTCAGAGCTTCAACGACGGACCAAATCATGAATCCTTTCTCGTCCGAAACTCGCCTGAGGGATATGATCCGGGCTGTACGGGCGTGCAAAACTGCAGCAGAGGAGCGTGGGGTTATTAGAAAAGAGTGTGCTGCTATTCGAGCAGCGATTAATGAAAATGATCAAGATTATAGGCATCGTAACATTGCTAAGCTTATGTTCATTCACATGCTTGGCTACCCTACACATTTTGGTCAAATGGAATGCCTCAAGTTGATTGCTTCTGCTGGTTTCCCAGAGAAGAGGATAGGGTATCTTGGTCTCATGTTACTTCTTGATGAGAGACAAGAAGTTCTAATGTTGGTTACAAACTCATTGAAACAAGATCTCAATCACTCAAACCAGTATATTGTGGGACTAGCTCTTTGTGCTTTGGGAAATATTTGTTCGGCTGAGATGGCCCGTGATCTAGCACCAGAAGTGGAAAGACTGCTACAATTCCGTGACCCAAATATTAGGAAGAAAGCAGCATTGTGTTCGATAAGAATTATAAAGAAAGTCCCAGAGCTGGCTGAAAATTTTATAAATCATGCAGCTTCCTTACTAAAAGAAAAGCATCATGGGGTTTTGATAACAGGTGTTCAACTTTGTACCGATCTCTGTAAAGTTAGTACAGAAGCCCTCGAGTATTTTAGAAAGAAATGCACAGAGGGAACGGTCAAGACTCTAAAGGATCTGGTCAATAGTTCATATTCACCGGAGTATGACATTGCCGGCATTGCGGACCCTTTCCTTCATATCCGATTGCTTAGGCTTTTGCGTGTGTTGGGCCAAGGAGATGCAGATGCTAGTGAAAAAATGAATGATATACTTGCTCAGGTGGCAACAAAAACTGAATCAAACAAAAATGCAGGGTATTCTATCCTGTATGAATGTGTTGAAACTATTATGAGCATTGAAGATAATGGTGGCTTACGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCCAATCATGACAACAATATCAGATATGTGGCATTAAACATGCTCATGAAGGCAATTACAGTGGATGCTCAAGCAGTGCAGAGGCATCGGACAACAATCTTGGAATGTGTAAAGGATACGGATGCTTCAATTCGGAAAAGGGCCCTGGAACTTGTTTATCTTCTAGTGAATGATAGCAATGTTAAACCTCTTACAAAAGAGTTAATCGAGTATCTGGAAGTAGCGGATCAAGAATTTAAGGAAGATCTTACTACAAAAATCTGCTCTATTGTCTCCAAGTTTTCCCCTGAGAAGATTTGGTACATTGATCAGATGCTCAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTTATTGTTGTGATAAGTAATGCTTCTGACCTCCACAAGTACACTGTAAGAGCGTTATACAGAGCGCTACAGGTTTCTACTGAACAGGAAAGTCTTGTTCGTGTGGCAGTTTGGTGTATTGGAGAATATGGTGATATGCTGGTCAATAATGTTGGAATGTCTGATATAGAGGATCCAATGACAGTCACAAAGTCTGATGCTGTGGATGTCATAGAGACTGTTATTAAGCACCATATCCCAGATCTAAACACAAAAGCGATGGCTTTGATTGCTCTTCTGAAGCTGTCTTCACGATTCCCATCTTGTTCCGAGAGGATCAGAGGTATAGTTAGTCAATACCAAGGAAGCCTTGTTCTCGAATTGCAGCAAAGATCTATTGAGTTTAATTCTATTGTTGCAAAGCATCAAAATATTAGGTCAGCATTGGTTGAGCGGATGCCAGTATTAGACGAGGCAACATTCATGGGAAGGAGGACTGGCTCTATGCCAACAACAGTTTCAACTCCCAATGGGACTTCAGTTAGTATTCCAAATGGAGTTGCTAAACCTGCTGCAGCTCCCCTGGTTGATTTACTTGATCTTGGTTCCGAAGATGCTGTCGCTCTCAGCTCTTCTGGTGGCGACCTTATCCAGGATCTTCTTGGTCTTGATTTATCTCCAACTTCCAAAACAGGTATAAATTTGGCCCCAAAAAGTGGGGCTGATGCTCTACTGGATATTTTGTCTATTGGAACACCACCTGCACAAAGCCCACCTTCTACTTCAGACATATTTTCTGATCAAGATAAGAGGACACCTGTCATGCCATTCGATGGACTCTCATCTCTTTCTTCACATCCAACACAAGCCACTTCTCTTGCTGGATCTTCTCCAATGATGGATTTATTGGATGGCTTTGCCCCTAAATCATCAACCCCTGAAGACAACGGTACAGCATATCCATCTATAATCGCCTTTGAGAGCAGCTCCTTGAGAATAACATTTAATTTGTCCAAGCCACCTGGAAATCCACAAACAACATCGATCGAGGCTACTTTTACAAATTTATCACCTAATGCCTATACAAATTTTATTTTCCAGGCAGCAGTTCCTAAGTTTCTTCAATTGCAATTGGATCCAGCAAGCGGCAATACTCTCCCTGGAAATGGTAACGGGTCTATCACACAAAGTTTAAGAGTAACTAACACCCAACATGGAAAGAAATCCCTTGTCATGCGTATAAAGATAGCATACAAGTCGAACGAGAAAGATGTTTTGGAGGAGGGGCAAATCAATAATTTCCCTGGCGGTTTATGA 4344 42.98 MGKKKDFLILGLTLFMLSGAVSSSAITTPPAKIVSGVFSNAASMLMKRLWSLKATTKTAITGRPLMKFESGYTVETVFDGSKLGIEPYSVEVLPNGDLLILDSANHNIYRMSSSLSLHSRPKLIAGSGEGYSGHVDGKPREARMNQPRGLAVDDRGNIYIADTMNSAIRKISDAGVTTIAGGKWGRGRVHVDGPSEDSKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLRFDDCAYQYGNGFPFGTAVLVAAGFFGYLLALLQLRVGSSSSPNVQASLKTSNISSSYEKPLKSTRPPLIPTEDEPEKQETFIGSITRLLSTAWGSVMEILGGVFPGLKRNPVGVNYQDQLYEEKHSNSCPVQESFVIPDEDEPPPPSIETRTPTPRKTYAFMSKSAEKMQQLRQSRAFYSGLDSDLLLQQQQKQRLQKPQQQHYHQRSHSSIPYTYYEKSHEKIDEIVFGAVQEQDGRQDKVVIKPVDYGGRRRRRRARTFFFISDNLPYTVRSKITPSLSLRSRWKLVRISDLVLQLTGKYLFAGITDAVLTFLVFDSLLYSVSAWICLSFLRASTTDQIMNPFSSETRLRDMIRAVRACKTAAEERGVIRKECAAIRAAINENDQDYRHRNIAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPELAENFINHAASLLKEKHHGVLITGVQLCTDLCKVSTEALEYFRKKCTEGTVKTLKDLVNSSYSPEYDIAGIADPFLHIRLLRLLRVLGQGDADASEKMNDILAQVATKTESNKNAGYSILYECVETIMSIEDNGGLRVLAINILGRFLSNHDNNIRYVALNMLMKAITVDAQAVQRHRTTILECVKDTDASIRKRALELVYLLVNDSNVKPLTKELIEYLEVADQEFKEDLTTKICSIVSKFSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHKYTVRALYRALQVSTEQESLVRVAVWCIGEYGDMLVNNVGMSDIEDPMTVTKSDAVDVIETVIKHHIPDLNTKAMALIALLKLSSRFPSCSERIRGIVSQYQGSLVLELQQRSIEFNSIVAKHQNIRSALVERMPVLDEATFMGRRTGSMPTTVSTPNGTSVSIPNGVAKPAAAPLVDLLDLGSEDAVALSSSGGDLIQDLLGLDLSPTSKTGINLAPKSGADALLDILSIGTPPAQSPPSTSDIFSDQDKRTPVMPFDGLSSLSSHPTQATSLAGSSPMMDLLDGFAPKSSTPEDNGTAYPSIIAFESSSLRITFNLSKPPGNPQTTSIEATFTNLSPNAYTNFIFQAAVPKFLQLQLDPASGNTLPGNGNGSITQSLRVTNTQHGKKSLVMRIKIAYKSNEKDVLEEGQINNFPGGL 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7599875 7610174 - Conep19aG0105000.1 Cone19ag1018 459455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1018 1447 Pfam Adaptin C-terminal domain 1331 1444 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone19ag1018 1447 Gene3D - 46 229 IPR011042 -
Cone19ag1018 1447 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 1327 1444 IPR008153 -
Cone19ag1018 1447 FunFam AP-1 complex subunit gamma 1316 1447 - -
Cone19ag1018 1447 SMART alpha_adaptinc2 1324 1444 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone19ag1018 1447 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 583 1435 IPR050840 GO:0006896(PANTHER)|GO:0030121(PANTHER)|GO:0035615(PANTHER)|GO:0140312(PANTHER)
Cone19ag1018 1447 SUPERFAMILY Clathrin adaptor appendage domain 1305 1445 IPR013041 -
Cone19ag1018 1447 Pfam Adaptin N terminal region 599 1150 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 1262 1277 - -
Cone19ag1018 1447 Gene3D - 1306 1445 - -
Cone19ag1018 1447 SUPERFAMILY NHL repeat 73 228 - -
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 1261 1302 - -
Cone19ag1018 1447 Pfam NHL repeat 145 170 IPR001258 GO:0005515(InterPro)
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 366 385 - -
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 422 441 - -
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 286 307 - -
Cone19ag1018 1447 SUPERFAMILY ARM repeat 597 1165 IPR016024 -
Cone19ag1018 1447 Gene3D - 566 1166 IPR011989 -
Cone19ag1018 1447 MobiDBLite consensus disorder prediction 1287 1302 - -
Cone19ag1018 1447 FunFam AP-1 complex subunit gamma 574 1166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1018 K12391 - - mdm:103402991 1398.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1028 Cone-Chr13:8561128 Cone19ag1018 Cone-Chr19:7599875 1.04E-284 dispersed
Cone19ag1018 Cone-Chr19:7599875 Cone5ag1367 Cone-Chr5:8345300 2.60E-74 dispersed
Cone12ag0633 Cone-Chr12:5709420 Cone19ag1018 Cone-Chr19:7599875 0 wgd
Cone13ag1027 Cone-Chr13:8552982 Cone19ag1018 Cone-Chr19:7599875 0 wgd
Cone16ag0913 Cone-Chr16:9389850 Cone19ag1018 Cone-Chr19:7599875 4.44E-131 wgd
Cone19ag1018 Cone-Chr19:7599875 Cone2ag0142 Cone-Chr2:753280 1.77E-130 wgd
Cone19ag1018 Cone-Chr19:7599875 Cone8ag0649 Cone-Chr8:6459419 1.92E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41