Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1019 ATGGCATCGAGATCATATGCAAACTTTCTGGATTTGGCCTCTGGTGAGCTATTGGATATTCCTCGTACTCCTAGGTCGCTTCCTAGAGTAATGACTGTGCCTGGAATTATATCTGACTTGGATAATAATGGAAACAATGATTCGGACTCTAACTCATCATCTGCATATCGTGAGCGGAAAATCATTGTTGCAAATATGTTACCTTTGCATGCTAAAAGAGATACTGAATCTGCCAAATGGTTCTTCAGTTTAGATGAGGACTCACTTTTGTTGCAATTGAAGGATGGTTTCTCACCTGAAACGGAGGTTATCTATGTGGGTTCTCTCAAGGTCGAAGTTGATATCAGCGAACAAGAAGAAGTTTCTCAGAAGCTGCTGGAAGAGTTTAATTGTTTACCTACATTTCTACCTCGTGACCTTCAGAGAAAGTTCTATCTTGGGTTCTGTAAACAGCAGCTGTGGCCTTTATTCCATTACATGCTACCCATGTGCCCAGACCATGGCGAGCGTTTTGATCGTATGCTTTGGCAAGCATATGTTTCTGCAAACAAAATATTTTCTGACAAGGTTGTGGAAGTCCTGAATCCTGAGGATGATTATGTTTGGGTCCATGATTATCATTTAATGCTTCTCCCAACCTTTTTGAGGAAACGCTACAATCGAGTTAGACTTGGGTTTTTCCTCCACAGCCCATTTCCCTCATCAGAAATATACCGCACTTTACCTGTCCGGGATGAAATTCTTCGGGGCTTGCTTAACTGTGATCTAATCGGTTTCCATACATTTGATTATGCTCGTCACTTTCTCTCATGCTGTAGCAGAATGCTGGGCTTGGACTATGAATCAAAGAGGGGACACATTGGACTTGATTACTATGGCCGTACGGTTTATATTAAAATTCTGCCTGTAGGCATACACATGGGTCGCCTTGAATCAGTAATGAATTTACCTTCGACTTCTGCCAAGGTTAAAGAGATTCAAGAGCAATTTAAGGGCAAGAAGTTGATTCTCGGTGTTGATGACATGGACATATTTAAGGGGATTAGCTTGAAACTCCTAGCTGTGGAACAGCTCTTACAGCAACATCCACAGCTGCAAGGCAAAGTAGTCCTGGTTCAAATTGTAAATCCTGCTAGGGGATCAGGGAAAGATGTTCAGGAAGTGCAGAAGGAAACCTATGTTACTGCTGAAAGGATCAATAGACTTTATGGCTCACCTGACTATACGCCAGTGATTGTAATTGATCGCCCTGTGCCTCATTTCGAAAAGACTGCTTATTATGCTTTAGCAGAATGTTGCATAGTGAATGCTGTGAGGGATGGTATGAACTTGGTCCCTTACAAGTACATTGTCTGTAGGCAAGGGACTCCATGTATGGATGAGGCTATGGGGTTAGAAAATGGTTCTCATAGGACAAGCATGCTTGTTGTATCTGAGTTTATCGGTTGCTCACCTTCTTTAAGTGGAGCAATCAGGGTTAACCCGTGGGATGTTGATGCCGTTGCTGATGCCTTGGAATCAGCCATCATTATGCAGGATTCAGAGAAGCAACTGAGGCATGAGAAACATCATCGATATGTCAGTTCTCATGATGTGGCATATTGGGCCCGCAGCTTTATGCAAGATTTGGAGAGAGCATGCCAGGATCATTATAGTAAACGATGTTGGGGAATTGGTTGGGGCCTTGCTTTTAGAGTTGTGGCACTTTCTCCAGGTTTTAGGAAGCTGTCTATTGATCACATTGTCTTGGCTTACAAAAGAACTAATAGAAGAGCAATATTTTTGGATTATGATGGCACTCTTGTTCCACAGAATTCTATAATTAAGACCCCAAGCCCAAAAGTCATCTCAGTTATAAATACCCTTTGCCAGGACCCAAAGAACACTATATTTATTGTGAGTGGGAGGGGAAGAAGTTCCTTAAGTGAGTGGTTCGCCTCATGTGAGATGCTTGGAATTGCAGCTGAACATGGTTATTTTATAAGGTGGGGTGGAACACCAGAGTGGGAAATCAGCCCTCCAACTGCTGATCTTGATTGGATAAAAATTGCTGAACCTGTAATGAGATTATATACAGAAACTACTGATGGTTCTAACATAGAAACTAAAGAAAGTGCTCTGGTTTGGCACCATCAAGATGCGGATCCAGACTTTGGATCCTGCCAAGCAAAGGAATTACTAGATCATCTTGAAAATGTTATTGCCAACGAGCCTGCAGTAGTTCATAGGGGCCAAAATATCGTTGAAGTTAAACCACAGGGAGTAAGCAAAGGACTGGTTGCACAAAAGGTTCTCTCAAGAATGTTGAATGGTGGAGCCTCACCGGATTTTGTTATGTGCATTGGGGATGATAAATCAGACGAAGACATGTTTGAGAGCATATTAAGCACCGTCTCCGGTTCAGGCTTCCCCTCAGCTCCTGACATATTTGCCTGCACTGTTGGAAGAAAGCCGAGCAAGGCTAAGTTTTATCTTGATGATACTTTGGAGGTTGTGAGATTACTCCAAGGCCTTGCCTCTTCTTCTTGTCCAAAGCCTAGACAACCATTACAAACCCGCATTTCTTTTGAGAGTTCCGTATGA 2583 42.55 MASRSYANFLDLASGELLDIPRTPRSLPRVMTVPGIISDLDNNGNNDSDSNSSSAYRERKIIVANMLPLHAKRDTESAKWFFSLDEDSLLLQLKDGFSPETEVIYVGSLKVEVDISEQEEVSQKLLEEFNCLPTFLPRDLQRKFYLGFCKQQLWPLFHYMLPMCPDHGERFDRMLWQAYVSANKIFSDKVVEVLNPEDDYVWVHDYHLMLLPTFLRKRYNRVRLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVKEIQEQFKGKKLILGVDDMDIFKGISLKLLAVEQLLQQHPQLQGKVVLVQIVNPARGSGKDVQEVQKETYVTAERINRLYGSPDYTPVIVIDRPVPHFEKTAYYALAECCIVNAVRDGMNLVPYKYIVCRQGTPCMDEAMGLENGSHRTSMLVVSEFIGCSPSLSGAIRVNPWDVDAVADALESAIIMQDSEKQLRHEKHHRYVSSHDVAYWARSFMQDLERACQDHYSKRCWGIGWGLAFRVVALSPGFRKLSIDHIVLAYKRTNRRAIFLDYDGTLVPQNSIIKTPSPKVISVINTLCQDPKNTIFIVSGRGRSSLSEWFASCEMLGIAAEHGYFIRWGGTPEWEISPPTADLDWIKIAEPVMRLYTETTDGSNIETKESALVWHHQDADPDFGSCQAKELLDHLENVIANEPAVVHRGQNIVEVKPQGVSKGLVAQKVLSRMLNGGASPDFVMCIGDDKSDEDMFESILSTVSGSGFPSAPDIFACTVGRKPSKAKFYLDDTLEVVRLLQGLASSSCPKPRQPLQTRISFESSV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7611801 7616847 - Conep19aG0105100.1 Cone19ag1019 459456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1019 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone19ag1019 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Cone19ag1019 860 Gene3D Glycogen Phosphorylase B; 51 311 - -
Cone19ag1019 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Cone19ag1019 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Cone19ag1019 860 NCBIfam trehalose-phosphatase 589 838 IPR003337 GO:0005992(InterPro)
Cone19ag1019 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone19ag1019 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Cone19ag1019 860 Gene3D - 590 704 IPR023214 -
Cone19ag1019 860 Gene3D - 720 848 IPR023214 -
Cone19ag1019 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Cone19ag1019 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone19ag1019 860 CDD HAD_TPP 592 833 - -
Cone19ag1019 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Cone19ag1019 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Cone19ag1019 860 Pfam Trehalose-phosphatase 594 827 IPR003337 GO:0005992(InterPro)
Cone19ag1019 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0353 Cone-Chr16:5842999 Cone19ag1019 Cone-Chr19:7611801 0 dispersed
Cone19ag1019 Cone-Chr19:7611801 Cone9ag0385 Cone-Chr9:1756657 0 dispersed
Cone13ag1029 Cone-Chr13:8565499 Cone19ag1019 Cone-Chr19:7611801 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1019 K16055 - csv:101212688 1476.07