Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1022 ATGTCGCGGGTTTATATTGGAAATTTGGATCCACGAGTAACAGAGAGGGAGCTTGAAGATAAATTTCGAATGTTCGGCGTTCTGCGGAGTGTCTGGGTTGCGAGAAGGCCACCAGGGTATGCATTTATCGAGTTTGATGATCGCAGAGATGCTCTCGATGCAATACAGGCACTTGATGGGAAAAATGGTTGGCGGGTGGAGCTTTCTCATAATTCTAAGGGTGGAGGGGGTGGGGGCGGTCGTGGCGGTCGTGGCGGCGGGCGTGGAGGCGGTGAGGACTCAAAGTGCTATGAGTGTGGTGAACCGGGCCATTTCGCTCGAGAATGCCGTGCACGGATTGGCCCACGAGGCTCAGGAAGTGGCCGTCGTAGAAGCCCATCCCCGAGACGGCGTAGAAGTCCAAGTTATGAAAGATATGGGCGCAGTCCTCGTGGGAGAAGATCTCCCAGACGTCCTAGCATCTCACCTCCAAGGCGTGGGTCCCCTCCATATCGTCATGCTCGTCGGCTTGAGCAGGAACTTGGGTTGAAACTGCTGCTGGATGATATTGCAGGATGCATTTTAAGAGCTCTTATAGCAATTGTTGAACAAACTGGAATCATGTTAGTGATCAGTGGTCGAGTCTATAAACACTTTCCTGCAAAGAAGGCTTCTGATTTAGGTTACCTCTTCTATTACTGTTTGCTGGTTCAAGAAGATGAACACAGATCCATCTGCACATCGACCATCAGCGATGTCTGCATTGTGTTCAGGTCCATAATTTTTTCGTCAGTCATGGTTTCTACTTACGGCCCTCATCTAGCATTTCTCGCCTCATACTTAACACCTCAAAGATGGAAGCAGTCGCCTTTGGTTTGCTATTCGCCTATTCCTGCTTTCAAGTCTCAAATTGGTTGTGAAAGCTTGTTTTAA 912 49.34 MSRVYIGNLDPRVTERELEDKFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRGGRGGGRGGGEDSKCYECGEPGHFARECRARIGPRGSGSGRRRSPSPRRRRSPSYERYGRSPRGRRSPRRPSISPPRRGSPPYRHARRLEQELGLKLLLDDIAGCILRALIAIVEQTGIMLVISGRVYKHFPAKKASDLGYLFYYCLLVQEDEHRSICTSTISDVCIVFRSIIFSSVMVSTYGPHLAFLASYLTPQRWKQSPLVCYSPIPAFKSQIGCESLF 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7633220 7635213 + Conep19aG0105400.1 Cone19ag1022 459459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1022 303 Gene3D - 89 153 - -
Cone19ag1022 303 SUPERFAMILY Retrovirus zinc finger-like domains 86 113 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag1022 303 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Cone19ag1022 303 MobiDBLite consensus disorder prediction 69 92 - -
Cone19ag1022 303 SMART rrm1_1 3 69 IPR000504 GO:0003723(InterPro)
Cone19ag1022 303 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 165 IPR050907 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0016607(PANTHER)
Cone19ag1022 303 Pfam Zinc knuckle 95 110 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag1022 303 Pfam RNA recognition motif 4 61 IPR000504 GO:0003723(InterPro)
Cone19ag1022 303 CDD RRM_SRSF3_like 3 71 - -
Cone19ag1022 303 Gene3D - 1 88 IPR012677 -
Cone19ag1022 303 SMART c2hcfinal6 95 111 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag1022 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723(InterPro)
Cone19ag1022 303 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676(InterPro)
Cone19ag1022 303 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag1022 303 MobiDBLite consensus disorder prediction 110 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1022 K12896 - - csv:101213165 211.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1084 Cone-Chr17:8081109 Cone19ag1022 Cone-Chr19:7633220 7.12E-29 dispersed
Cone19ag1022 Cone-Chr19:7633220 Cone4ag1864 Cone-Chr4:13363054 6.52E-58 dispersed
Cone13ag1031 Cone-Chr13:8583095 Cone19ag1022 Cone-Chr19:7633220 3.73E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76