Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1026 ATGATTCGTGTTCCATTTCCTCCCCGACCTCCAGGAGTACTTGGTATGGTTCCTGCAATGCCACGCCCTCCTGTTCCAGGGATGCCTGGAATCCGCCCTATGATCACCCCTATTGTCCGGCCAGGACTTCTTCCTAGTGTTACACCGGCTGAAAAACCACAAACCACTGTTTACATTGGGCGGATAGCACAAACTGTGGAAAATGATTTCATGTTATCTCTCCTTCAGTTTTGTGGGCCTGTGAAGAGTTGGAAACGTGTTCAAGACCCTACAGATGGGAAGCCTAGAACCTTTGGGTTCTGTGAGTTTGAGTTTGCTGAAGGGGTTCTTCGTGCTTTGCGACTGCTTACTAAGTTTAACATTGATGGGCAAGAATTGGCGTTAAAAGGTACTCAAGCAACAAGAAACTATCTGAAATGTTATGTTGAAAAGAAAACTGAAAACTCAAAGAAATCACAAGAGACTAAAGCTGCAGAGCCTAAAGAAGAGGAAGGAGGAGGAGCGGGTGTGGAGAAGAATGAAGCTTCCAAGCCAACTGTAGAGAGCTCAAAAGAGGACAATGATTCAGGGGCCAATGAAGATCATGACATTGCCTATTCTGCAATTGTGACTGATGAAGATAGGGAAGCTGACAAAGAGGCATTGGAGAAGCTTACAAATGCAATAGAGGAAAGGTTGAAAACAAATCCTCTTCCTCCACCTCCACCTCCTCCTCCACAAGCACCTGCTGATGGCACCCATAATTCAAGTGCAGAACCACCAGCTAAATTGAGGGATGCAGACTCCGATACTGATATAATGAGAAATGATACTAATGAAGATAAAAATGATAATGAGACAACTAGTGACCACAAACAAACAAGTGAGCATGACAAGCCTGAAACAAGCTCACCAGATAGGAGTAGAAGATATGATAGGAGAAGCAGAGACAGAGATAGAGAGTGGGATCTAAAACGGGAAAAGGAGCGAGAGATTGAGAGATACGAAAGAGAAACTGAGCGAGAAAGAATTAGGAAAGAGAGGGAGCAAAGAAGGAAGATTGAGGATGCTGAGCGTCAGTATGAAGAATGTCTTAAAGAGTGGGAATATAGAGAAAGAGAGAGAGAGAAACAGAGGCAGTATGAGAAAGAGAGGGAGAAAGAAAGGGAACGCAAAAGGAAGAAGGAGGTAATCTATGATGAAGATGATGATGAGGAGGAGGATTCAAGGAAGAGATGGCGCAGGAGTGTGATAGAGGAAAAGAGAAAGAGGAGGCTAAGGGAAAAGGAAGATGACTTGGCTGATAGACAGAGAGAAGAAGAAGAACAAATTGCCGAGGCCAAGAAGAAGGCTGAAGAGGAGGAACAAAAGCAGAAGCAAAAGAGAGGTGCATTGAAGCTCCTGTCTGATCAGGTGAAGAAATTCAATGAGACAACTAATTTACCAGAAGAATCCACAATTGAAATAAAAGAAAAAGCTGTGGACCCGATGTATGATGGAGACTCTGGCCACGAAAACCATATAGGTGATGGGATTTTCCAAAATGGTAGTGGTGATGAATCAATATTCGCATCAACTAATGCATCAGATGCACGGCAAGGTGCTGGTAACGTGCCTGCAAAAAGGTTAGGATTCGGTCTAGTAGGATCTGGAAAAAGAACTACTGTCCCTTCAGTTTTCCATGAGGAAGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCCTTGGTTCCAATAGATTACTCGGCCGATGAAATACAGGCAGTACAACCTACAGTTTCTGGGGCACCCGCTCCAAACCTGGCTGCTGCAGCAGAGTTTGCAAAGCGTTTATCTAATCCTAATTCTAGAGAAGAGAAACCCGATTCAGAGGAGAGAGGTAGATGTCCTAGTGATAAGTCTAGCCATAGAGACCGGAATGATGAAGATACACATCGCAGCAAAGATGGGAAGAGGTCTAATAACAGGGAGAGGGACAGAGAACACGGGGTGGATAAAGTAAAGACAGCGGATAACAAGAAGTTATTGGACGCAAAGCAATTAATCGATATGATACCCAAGACAAAGGAGGAGTTATTTTCGTACGAGATAAATTGGGCCATTTATGACAAGCATGATCTGCATGAGAGAATGAGACCGTGGATTTCGAAAAAGATTACAGAGTTTTTGGGGGAAGAAGAAGCTACCCTGGTAGATTACATTGTTTCTAGTACTCAAGAACATGTGAAGGCTTCTCAAATGCTGGAACTACTTCAATCGATATTGGATGAAGAAGCAGAAATGTTTGTCCTGAAAATGTGGAGGATGCTCATCTTCGAAATCAAAAAGGTAGAGACAGGCCTTGCCGTGAGATCTAAGAATTGA 2346 43.56 MIRVPFPPRPPGVLGMVPAMPRPPVPGMPGIRPMITPIVRPGLLPSVTPAEKPQTTVYIGRIAQTVENDFMLSLLQFCGPVKSWKRVQDPTDGKPRTFGFCEFEFAEGVLRALRLLTKFNIDGQELALKGTQATRNYLKCYVEKKTENSKKSQETKAAEPKEEEGGGAGVEKNEASKPTVESSKEDNDSGANEDHDIAYSAIVTDEDREADKEALEKLTNAIEERLKTNPLPPPPPPPPQAPADGTHNSSAEPPAKLRDADSDTDIMRNDTNEDKNDNETTSDHKQTSEHDKPETSSPDRSRRYDRRSRDRDREWDLKREKEREIERYERETERERIRKEREQRRKIEDAERQYEECLKEWEYREREREKQRQYEKEREKERERKRKKEVIYDEDDDEEEDSRKRWRRSVIEEKRKRRLREKEDDLADRQREEEEQIAEAKKKAEEEEQKQKQKRGALKLLSDQVKKFNETTNLPEESTIEIKEKAVDPMYDGDSGHENHIGDGIFQNGSGDESIFASTNASDARQGAGNVPAKRLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSADEIQAVQPTVSGAPAPNLAAAAEFAKRLSNPNSREEKPDSEERGRCPSDKSSHRDRNDEDTHRSKDGKRSNNRERDREHGVDKVKTADNKKLLDAKQLIDMIPKTKEELFSYEINWAIYDKHDLHERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAVRSKN 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7651304 7656878 - Conep19aG0105800.1 Cone19ag1026 459463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1026 781 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 780 IPR053294 -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 364 404 - -
Cone19ag1026 781 Pfam PWI domain 704 767 IPR002483 -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 177 223 - -
Cone19ag1026 781 ProSiteProfiles PWI domain profile. 684 781 IPR002483 -
Cone19ag1026 781 FunFam RNA Binding Motif protein homolog 660 776 - -
Cone19ag1026 781 CDD RRM_RBM25 55 138 IPR034268 -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 228 243 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 254 349 - -
Cone19ag1026 781 Coils Coil 318 360 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 606 662 - -
Cone19ag1026 781 SMART rrm1_1 56 129 IPR000504 GO:0003723(InterPro)
Cone19ag1026 781 MobiDBLite consensus disorder prediction 417 457 - -
Cone19ag1026 781 SUPERFAMILY RNA-binding domain, RBD 49 126 IPR035979 GO:0003676(InterPro)
Cone19ag1026 781 MobiDBLite consensus disorder prediction 511 526 - -
Cone19ag1026 781 Coils Coil 416 464 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 489 569 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 148 349 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 364 392 - -
Cone19ag1026 781 MobiDBLite consensus disorder prediction 550 569 - -
Cone19ag1026 781 SUPERFAMILY PWI domain 703 769 IPR036483 -
Cone19ag1026 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723(InterPro)
Cone19ag1026 781 MobiDBLite consensus disorder prediction 604 662 - -
Cone19ag1026 781 Coils Coil 363 384 - -
Cone19ag1026 781 Gene3D - 47 165 IPR012677 -
Cone19ag1026 781 Gene3D PWI domain 660 777 - -
Cone19ag1026 781 Pfam RNA recognition motif 57 126 IPR000504 GO:0003723(InterPro)
Cone19ag1026 781 MobiDBLite consensus disorder prediction 148 170 - -
Cone19ag1026 781 SMART pwi_2 697 770 IPR002483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1026 K12822 - - csv:101214372 928.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1035 Cone-Chr13:8598925 Cone19ag1026 Cone-Chr19:7651304 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47