Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1033 ATGGCGGGCGGTGAAGATGGCGTTTCTGAGATAGTTGGAGTCGAGGCTCCTCACGACTTCCGACTGATTCTCTCTTCGCCGGAGCGGGACTTTCTTATTCGCAAAAATGGTGATCAGGTTAAAATTGACAGTTTGGAAGGAAAGAAGCTTGGGTTGTACTTCTCAGCGTCATGGTGTGGCCCATGCCGAAGATTCACCCCTACCTTAGTGGAGGTATACGATCAACTCGCTTCTAAGGGTGATTTTGAGGTGATTTTCGTCTCAGGTGATGAAGATGACGAGTCATTTAACGAGTATTTCGCCAAGATGCCATGGCTTGCCATACCCTTTTCTGATTCAAAGACACGAAAATCCTTAGACGAATTGTTCAAGGTGAGAGGGATACCTCACTTTGTGGTTCTAGGGGAAAATGGCCAAGTCTTCACTGATAGTGGAGTTGAGATTATTCGTGACTATGGGGCGGATGCTTATCCCCTTACTCTTGAAAAAATCAAAGATTTGAAGGAACAGGAAGAAGCTGCTCGGAAAAATCAGTCACTGAGATCTATCTTGGTCTCGAGCTCCCGTGATTTCGTACTTTCATCTGATGGAAAACAGGTGCATGTATCTGAGCTGGAAGGGAAGACAGTGGGACTCTATTTCTCATTATCCTCATATGAAGCATGCACTGATTTTACTCCGAAACTCATTGAAGTTTATGAAAAACTGAAAGCTGCTGGGGAGAGCTTTGAGATTGTATTGATACCACTTGATGGTGATGAAGAATCTTTTACAAAAGATTTCAAAACCATGCCTTGGTTTGCATTGCCGATCAAGGATAAGAGTTGTCAGAAGCTACCTCGGTACTTTGAGCTCTCTACTCTTCCTACTTTAGTTATAATCGGACCAGATGGAAAAACCGTTCATCCCAATGTCTCTGAAGTGATTGAAGAGCATGGGATTATAGCATACCCTTTCACTCCAGAGAAGTTTAAAGAGCTTGATGAGATACAAAAGACGAAGGAGGAAGCTCAAACTCTCGAGTCAATATTGGTTTCAGGCGACCAAGATTATGTAATCGGAGAAGATGGAACAAAGATTCCGATATCAGCTTTAGTGGGCAAGAACATCCTCCTCTACTTCTCTGCACATTGGTGTCCTCCATGCCGGGCCTTCCTACCGAAACTTATAGAAGCATACCACAAGATAAAGGCAAAAGACGATGCCTTTGAAGTGATCTTCATATCTAGTGACAGAGACCAGTCATCCTTTGACGAGTTCTTTTCCACTATGCCATGGCTAGCCCTTCCTTTTGGCGACTCAAGAAAGGCATCCTTAAGCAGAACATTTAAGGTCAATGGAATCCCCAAGCTCGTTGCCATTGGACCAAGTGGTCGAACAATCTCCACAGGAGCTAGAGATCTAATCACAGTCCATGGTGCTGATGCATATCCTTTTACTGAATCCCGACTGAAAGAGTTGGAGGCAGAGTTGGAGCAGATGGCAAAGGGGTGGCCTGAGAACTTAAAACACGCACTCCATGATGAACATGAACTTGTCCTAACTCGTCGTGGGATCTATACATGTGATGGGTGTGAAAAGGAGGGGCATGCCTGGTCATTCTATTGTGACGACTGTGACTTTGATCTCCATCCCAAATGTGCTCTTGAAGAAGAAGACAAAGGGGGTAAAGGTGAGGTGGAGGAGGAACCAAAGGGCAAACAAGGATGGGTTTGTGATGGAGAAGTCTGCTATAAAGCATGA 1743 44.69 MAGGEDGVSEIVGVEAPHDFRLILSSPERDFLIRKNGDQVKIDSLEGKKLGLYFSASWCGPCRRFTPTLVEVYDQLASKGDFEVIFVSGDEDDESFNEYFAKMPWLAIPFSDSKTRKSLDELFKVRGIPHFVVLGENGQVFTDSGVEIIRDYGADAYPLTLEKIKDLKEQEEAARKNQSLRSILVSSSRDFVLSSDGKQVHVSELEGKTVGLYFSLSSYEACTDFTPKLIEVYEKLKAAGESFEIVLIPLDGDEESFTKDFKTMPWFALPIKDKSCQKLPRYFELSTLPTLVIIGPDGKTVHPNVSEVIEEHGIIAYPFTPEKFKELDEIQKTKEEAQTLESILVSGDQDYVIGEDGTKIPISALVGKNILLYFSAHWCPPCRAFLPKLIEAYHKIKAKDDAFEVIFISSDRDQSSFDEFFSTMPWLALPFGDSRKASLSRTFKVNGIPKLVAIGPSGRTISTGARDLITVHGADAYPFTESRLKELEAELEQMAKGWPENLKHALHDEHELVLTRRGIYTCDGCEKEGHAWSFYCDDCDFDLHPKCALEEEDKGGKGEVEEEPKGKQGWVCDGEVCYKA 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7677626 7680275 + Conep19aG0106500.1 Cone19ag1033 459470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1033 580 Pfam C1 domain 506 548 IPR004146 -
Cone19ag1033 580 SUPERFAMILY Cysteine-rich domain 498 549 IPR046349 -
Cone19ag1033 580 CDD TryX_like_TryX_NRX 350 479 IPR045870 GO:0004791(InterPro)
Cone19ag1033 580 ProSiteProfiles Thioredoxin domain profile. 20 169 IPR013766 -
Cone19ag1033 580 CDD TryX_like_TryX_NRX 30 158 IPR045870 GO:0004791(InterPro)
Cone19ag1033 580 Gene3D Glutaredoxin 343 480 - -
Cone19ag1033 580 Gene3D Glutaredoxin 182 320 - -
Cone19ag1033 580 Gene3D Glutaredoxin 23 160 - -
Cone19ag1033 580 ProSitePatterns Thioredoxin family active site. 371 389 IPR017937 -
Cone19ag1033 580 Coils Coil 161 181 - -
Cone19ag1033 580 SUPERFAMILY Thioredoxin-like 352 462 IPR036249 -
Cone19ag1033 580 ProSiteProfiles Thioredoxin domain profile. 331 489 IPR013766 -
Cone19ag1033 580 SUPERFAMILY Thioredoxin-like 33 141 IPR036249 -
Cone19ag1033 580 PANTHER THIOREDOXIN 19 313 IPR052259 -
Cone19ag1033 580 Pfam Thioredoxin-like 47 140 IPR012336 -
Cone19ag1033 580 Pfam Thioredoxin-like 367 459 IPR012336 -
Cone19ag1033 580 Pfam Thioredoxin-like 207 299 IPR012336 -
Cone19ag1033 580 SUPERFAMILY Thioredoxin-like 193 304 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1033 K17609 - - mdm:103403022 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1091 Cone-Chr17:8127460 Cone19ag1033 Cone-Chr19:7677626 8.80E-91 dispersed
Cone17ag1426 Cone-Chr17:9756747 Cone19ag1033 Cone-Chr19:7677626 2.44E-74 dispersed
Cone19ag1033 Cone-Chr19:7677626 Cone20ag0057 Cone-Chr20:279156 1.80E-98 dispersed
Cone19ag1033 Cone-Chr19:7677626 Cone19ag1034 Cone-Chr19:7681639 1.26E-217 tandem
Cone19ag1045 Cone-Chr19:7727251 Cone19ag1033 Cone-Chr19:7677626 3.18E-27 transposed
Cone19ag1046 Cone-Chr19:7727734 Cone19ag1033 Cone-Chr19:7677626 1.26E-32 transposed
Cone13ag1045 Cone-Chr13:8626276 Cone19ag1033 Cone-Chr19:7677626 7.11E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001026 1 2 1 1 0 4 3 3 2 3 3 3 3 3 3 3 3 2 2 4 3 3 2 3 3 3 4 3 3 5 81