Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1043 ATGGAAAATAGAAGTTTCCTCATCTTCTGTAAAGTGGGTTTAGTCTTTTTGGCATTAATGGAAGCTTCCTCTTCCTCTCTTTCTCCAACTGGTATCAACTATGAAGTTGTAGCTTTGATGGCGATAAAAAGTGATCTCATAGATCCACATAATGTTATGGAAAGTTGGGATGTAAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGCTCTTCTGATGGATATGTTTCAGCTTTTGGCCTGCCTAGCCAGAATTTTTCCGGCACCTTATCTCCTGGAATCGGAAACCTCAGCAACTTGCAATATTTGTTGCTTCATAGTAATGCCATTTCGGGTTCGATTCCGGATTCTATCGGAAAGTTAGAGAAGCTTCAGACTCTTGATCTTTCAAACAATATGCTAACCGGTCAGATACCAAGCTCTATAGGAAATCTAAGGAACCTGAATTATTTGCGGTTGAACAACAATACACTTACCGGACCTTGTCCTGGGCCATTGTCTAAAGTTGACGGTCTCACTCTCGTGGACTTTTCTTTCAACAACCTGAGTGGTTCCTTGCCGAAAATATCCGCAAGAACTTTTAAAATTATAGGTAACCCTTTGATTTGTAGCCCGAACAATTGCTCTGCCATCCTTCCCGAGCCACTCTCATTCCCACCCGATTCTCCCAAAGGCCTATCAGTATCTGGATCACAAGATCATCATGTCGCCATTGCATTCGGTTCAAGTTTCAGTGCTGCTTTTCTTCTTGTTGTTATTATCGGGTTTTTTGTCTGGTGGCGATACCGTCACAACCAACAGATTTTCTTCGATCTCAACGATGATACGGAGCTAGGCTTGGGCCATTTGAAAAGGTACGCGTATAAGGAGCTATGGACAGCAACAGACCATTTCAACTCTAACAATATTCTAGGTAGAGGTGGGTTCGGGATTGTCTACAAGGGATGTTTAAGTGATGGAAGCATTGTGGCGGTCAAAAGGTTGAAGGATTATAACATTGCCGGAGGAGGGGAAGTCCAATTTCAGACAGAAGTGGAGACGATTGGTTTAGCCCTCCATAGGAATCTTCTAAGGCTTTGTGGATTCTGCTCGACCGAAAATGAACGCCTTCTTGTTTATCCCTACATGCCTAATGGTAGTGTAGCATCTCAATTAAGAGATCATATCCATGGTAGGTCAACTCTAGATTGGATGAGGCGAAAGAGAATAGCATTGGGTACAGCTAGAGGACTTGTGTATTTACATGAGCAATGTGACCCAAAGATCATCCACCGAGACGTCAAAGCGGCAAACATTTTGCTTGACGAAGACTTTGAAGCTGTTGTTGGAGATTTTGGATTGGCCAAACTTTTGGACCATAGAGATTCTCATGTGACCACAGCCGTTCGTGGGACCGTGGGCCACATCGCACCAGAATACTTATCGACTGGTCAATCATCAGAGAAGACCGACGTGTTTGGGTTCGGGGTCTTACTTCTCGAGCTCATAACAGGTCAAAAGGCTTTAGATTTTGGACGAGGAGCTAACCATAAAGGGGTCATGCTTGATTGGGTGAAAAAGCTACATTCGGAAGGGAAGTTAAATGTGATAGTGGATAAGGATTTGCGCGGTAAATATGATAGATTGGAATTGGAGGAAATGGTGCAAATAGCTCTCTTGTGTACTCAATTTAATCCGGCTAACCGGCCAAGAATGGGCGAAGTGTTAAAGATGCTTGAAGGCGATGGGTTGCCGGAAAAATGGGAGGCTTCACAGCGAGTTGAGGCATCGCCAAGGTCAGGTTATAGGCAGTTTGATCAAAACCGTGCTCATCTAAGATACTGTGATTATATAGAGGATTCTTCACTTGTAGTTGAAGCAATGGAGCTTTCTGGGCCTAGATGA 1887 43.72 MENRSFLIFCKVGLVFLALMEASSSSLSPTGINYEVVALMAIKSDLIDPHNVMESWDVNSVDPCSWRMVTCSSDGYVSAFGLPSQNFSGTLSPGIGNLSNLQYLLLHSNAISGSIPDSIGKLEKLQTLDLSNNMLTGQIPSSIGNLRNLNYLRLNNNTLTGPCPGPLSKVDGLTLVDFSFNNLSGSLPKISARTFKIIGNPLICSPNNCSAILPEPLSFPPDSPKGLSVSGSQDHHVAIAFGSSFSAAFLLVVIIGFFVWWRYRHNQQIFFDLNDDTELGLGHLKRYAYKELWTATDHFNSNNILGRGGFGIVYKGCLSDGSIVAVKRLKDYNIAGGGEVQFQTEVETIGLALHRNLLRLCGFCSTENERLLVYPYMPNGSVASQLRDHIHGRSTLDWMRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGVLLLELITGQKALDFGRGANHKGVMLDWVKKLHSEGKLNVIVDKDLRGKYDRLELEEMVQIALLCTQFNPANRPRMGEVLKMLEGDGLPEKWEASQRVEASPRSGYRQFDQNRAHLRYCDYIEDSSLVVEAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7708908 7712040 + Conep19aG0107500.1 Cone19ag1043 459480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1043 628 Pfam Protein kinase domain 300 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1043 628 ProSiteProfiles Protein kinase domain profile. 299 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1043 628 SUPERFAMILY Protein kinase-like (PK-like) 284 581 IPR011009 -
Cone19ag1043 628 FunFam Somatic embryogenesis receptor-like kinase 1 377 593 - -
Cone19ag1043 628 SUPERFAMILY L domain-like 33 232 - -
Cone19ag1043 628 FunFam Somatic embryogenesis receptor kinase 1 270 376 - -
Cone19ag1043 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1043 628 Gene3D Transferase(Phosphotransferase) domain 1 377 592 - -
Cone19ag1043 628 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515(InterPro)
Cone19ag1043 628 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cone19ag1043 628 Pfam Leucine rich repeat 97 135 IPR001611 GO:0005515(InterPro)
Cone19ag1043 628 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524(InterPro)
Cone19ag1043 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 628 - -
Cone19ag1043 628 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 212 - -
Cone19ag1043 628 Gene3D Phosphorylase Kinase; domain 1 270 376 - -
Cone19ag1043 628 Gene3D Ribonuclease Inhibitor 32 211 IPR032675 -
Cone19ag1043 628 SMART serkin_6 299 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1043 Cone-Chr19:7708908 Cone6ag0493 Cone-Chr6:2454752 1.36E-209 dispersed
Cone12ag0650 Cone-Chr12:5934516 Cone19ag1043 Cone-Chr19:7708908 2.22E-304 wgd
Cone13ag1054 Cone-Chr13:8658071 Cone19ag1043 Cone-Chr19:7708908 0 wgd
Cone19ag1043 Cone-Chr19:7708908 Cone8ag0675 Cone-Chr8:6742879 2.09E-306 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82406 PF13639 zf-RING_2 1.70E-13 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1043 - - - 0.0