Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1068 ATGGGGCTTGCAAATTTTCCTACTTCCGGAGTATTACCAATTATAGTAATAAATACATTGTTATCATTAGCTTTGTTGAAGAACATGGTGAGATATGTGCTTCAAGTGATCAGGGTTTATAGTAATATTGTAAACCCTACAAATTTAGAAGAGGAAGAAGAAGAAGAAGCAACCCAGCTCAAATATATCAGCAGATTAAGTGGGCCTAATGGCAGCCAATTTGGTGGTGGTGGGGGGTCAATGGTGGAACAGTGTTGTGTATGTCTATGTCGGTTTGAAGATAATGAGGAAGTGAGTGAGTTGTCATGCAAGCATTTCTTCCACAAAGTATGTCTTGCTAAGTGGTTTGATAAGCAGCATAGTACCTGCCCTCTTTGCCGCTCTATTCAATAA 393 39.44 MGLANFPTSGVLPIIVINTLLSLALLKNMVRYVLQVIRVYSNIVNPTNLEEEEEEEATQLKYISRLSGPNGSQFGGGGGSMVEQCCVCLCRFEDNEEVSELSCKHFFHKVCLAKWFDKQHSTCPLCRSIQ 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7828986 7829378 - Conep19aG0110000.1 Cone19ag1068 459505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1068 130 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Cone19ag1068 130 PANTHER - 1 129 IPR044249 -
Cone19ag1068 130 Pfam Ring finger domain 84 127 IPR001841 -
Cone19ag1068 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 130 IPR013083 -
Cone19ag1068 130 SMART ring_2 85 126 IPR001841 -
Cone19ag1068 130 SUPERFAMILY RING/U-box 84 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1068 K16285 - - gmx:100811790 138.272
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1068 Cone-Chr19:7828986 Cone1ag1288 Cone-Chr1:56258439 1.41E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g638 . . . . . . . . . Cmo18g00766 . . . Car18g00696 Sed06g1693 . Cpe01g01571 Bhi07g01794 Tan04g0160 Cmetu10g1376 . Hepe10g1588 . . . . . . . . . . Cone19ag1068 . . Lsi04g00599 . . Cme10g00580 . . . . . . . . . . . Cma04g01774 . Car04g01798 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010996 1 1 0 0 0 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31