Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1083 ATGAGGCTACAAACATGGCTTGCCACCTGTTCCTCCTTCGTATGCGCCTCCACGGTAGATGAATCGGCCGTCATTCCACAGAATCAGAAAATAATAACTTCCGGTTCTAGCAGCTGCTACGGTACTCCTGCTAGCACCAGCTCATCAGCATCTTCTTTTTCGGGCGAGACCAGTAGCAGTATGAGTGCTAGTACTCTAGAGAGCAATCTCTCACTCCAAACTTTACCTTCTGTTCCATCTCTCCAGAAACTTCCTCCGGAAACTCTCACTCCTCTTCCTGACTCTCATCTCTGCCTCATTTCGTTTACTCCTCGACCAGGAATTTCAATCTCCTGCATTGCGATTCATGGAAATGAAATCTACGTCGCCTCAGGCCACGAAATCAACGTCTACGATCGGACGACGCTGACGCATCTCGACGCATTCAACAACGGTCGAGATTCCTCCTCTGGCTCCGTCAAAGCGATAACGTTCGCCGACGGCACAATCTTCACCGCTCACCAAGACGACAAGATCCGAGCCTGGAAGATGACGGCGGAGAAACGGCACACACTGGTAAACACTCTTCCTACCGTAAACGATAAGCTATTCCGTCTGATTTTTCCTAAGAACTACGTGAACGTCCGCCGTCACAAGAAGCGGCTATGGATTGAACACTCCGACGCCGTTACTGGACTCGCCGTCAATAACGGTTTGATCTATTCTGTTTCGTGGGATAAGAGTTTGAAAATATGGCGCACTTCTGATCTCCGTTGCGTGGAGTCCATCAAAGCTCATGAAGACGCCGTGAACGCCGTGGCAGTTTCTTTAGACGGAACTATTTACACCGGATCGGCGGATAGTCGGATCCGAATTTGGAGCAAACCGTATGGCGAGAAGCGACACGTGTTGACCGCCACGCTGGAGAAACACAAGTCAGCTGTAAACGCATTAGCTCTAAACGACGACGGATCAGTGCTGTTTTCTGGCGCTTGTGATCGTTCGATCTTGGTATGGGAAAGAGAAGATAGTGCAAATCACATGGCTGTGATTGGCGCTTTGAGAGGACATGAGAAGGCGATACTTTGCTTGATCAACTTCTCTGATTTATTGTTCAGTGGGTCAGCTGATCGGACGGTGAGGATTTGGCAGCGACGTCAAGATGGGAGTTACAGTTGTTTATCTATACTGGAAGGCCATATGAAGCCGGTGAAGTCGTTAACAGTAGTTCCAGACGGAGAAGCTAACGGCGTCGTGTCTTTGTTTAGTGGGAGTCTAGACGGTGAGATGAAGGTGTGGCAAATCTCAATGCCGTCAAATCCGCCGATTTGGAGTTTATGA 1320 49.24 MRLQTWLATCSSFVCASTVDESAVIPQNQKIITSGSSSCYGTPASTSSSASSFSGETSSSMSASTLESNLSLQTLPSVPSLQKLPPETLTPLPDSHLCLISFTPRPGISISCIAIHGNEIYVASGHEINVYDRTTLTHLDAFNNGRDSSSGSVKAITFADGTIFTAHQDDKIRAWKMTAEKRHTLVNTLPTVNDKLFRLIFPKNYVNVRRHKKRLWIEHSDAVTGLAVNNGLIYSVSWDKSLKIWRTSDLRCVESIKAHEDAVNAVAVSLDGTIYTGSADSRIRIWSKPYGEKRHVLTATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMAVIGALRGHEKAILCLINFSDLLFSGSADRTVRIWQRRQDGSYSCLSILEGHMKPVKSLTVVPDGEANGVVSLFSGSLDGEMKVWQISMPSNPPIWSL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7884280 7885934 - Conep19aG0111700.1 Cone19ag1083 459520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1083 439 Gene3D - 298 439 IPR015943 GO:0005515(InterPro)
Cone19ag1083 439 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Cone19ag1083 439 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Cone19ag1083 439 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 377 - -
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 287 - -
Cone19ag1083 439 SMART WD40_4 249 287 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 294 333 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 209 246 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 383 427 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 95 132 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 135 176 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SMART WD40_4 340 377 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 287 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 333 - -
Cone19ag1083 439 FunFam BnaA09g28200D protein 206 291 - -
Cone19ag1083 439 Pfam WD domain, G-beta repeat 217 245 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 Pfam WD domain, G-beta repeat 385 426 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 Pfam WD domain, G-beta repeat 344 376 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 429 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 SUPERFAMILY WD40 repeat-like 109 429 IPR036322 GO:0005515(InterPro)
Cone19ag1083 439 Gene3D - 94 297 IPR015943 GO:0005515(InterPro)
Cone19ag1083 439 CDD WD40 109 427 - -
Cone19ag1083 439 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 51 429 IPR045182 -
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 377 IPR001680 GO:0005515(InterPro)
Cone19ag1083 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 342 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0637 Cone-Chr12:5775687 Cone19ag1083 Cone-Chr19:7884280 1.10E-68 dispersed
Cone19ag1083 Cone-Chr19:7884280 Cone7ag0898 Cone-Chr7:7054842 4.74E-30 dispersed
Cone19ag1083 Cone-Chr19:7884280 Cone4ag1237 Cone-Chr4:10285545 2.91E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49