Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1084 ATGGGGAAGGAAGGTGGGCTATTCAGATATGCAGACGGTTTGGACAAATTTTTGATGGTTTTGGGCTCTTTGGGTAGTATTGGAGATGGGTTAATGTCACCACTCACCATGCTTGCTCTTAGTGGTATGATCGATGCCTATTCCGGCTCCGACTTTTCAGATCATGTGGTCGACAAGTATTCTCTTCGGCTTCTTTACATTGCGATTGGAGTTGGGATTTCTGCTTTCATGGAAGGAGCATGCTGGACAAGAACTGCAGAAAGACAAACTTCTCGGATGAGAACAGAGTACTTGAAATCAATTCTACAGCAAGAAGTCGGTTTCTTCGATAAGCAAGCTGCTTCTTCATCCTCCTTCCAAGTTGTTTCTTCTATATCCTCAGACTCTTATTTAATCCAAGACACAATAGCCGAAAAGGTACCGAACACTCTGGCCCACCTCTCCTCTTTCATCGTCTGCATTCCGGTTGCTTTCATGCTCTCTTGGCGTCTCGCCTTCTCTGCTCTTCCCTTCTCATTCATGTTCCTCATTCCGGGTGTAGTTTTCGGAAAGATGATGAAGGGATTGGGGATGGAAGCAAAGCATGCTTACGGAAATGCTGGGGGGATGGCGGAACAAGCCATTTCATCGATCCGGACAGTTTATTCGTATGTTGGAGAGCTTCAAACGATCGATAAGTTCAGTTCTGCCCTAGAGAAAAGTACTATTTTCGGGATCAAACTCGGGTTTATGAAGGGTTTGATGATGGGAAGCATGGCCATAATTTATGCTACTTGGGCGTTTCAGTCTTGGGTCGGTAGTGTTCTAGTTTCCGAGCGGGGAGAGAAAGGCGGCAGGGTTTTCGTTTCTGGGATTTGCGTCATCTTGGGTGGATTGTCCATTATGAGTGTGCTCCCGAATCTTTCATTTATCTCGGAAGCAAGTATTGCCGGAACCCGGATTTTCAAGATGATCGACCGGGTTCCAGATATAGATGCTGAAGATGGAAGTGGAAAATCACTGCAACATGTTAGAGGAAGTATAGAGTTTAGGCAGGTGGAGTTTTCTTACCCTTCAAGACCGGATACTCTGATCCTTCAAGGATTGAATCTCAAAGTGGAATCCGGTAAGACAGCTGGTCTTGTTGGAGGGAGCGGCTCGGGAAAGTCAACTGTAATATCTCTATTGGAGAGATTCTATGACCCCATCAAAGGAGATATTCTACTTGATGGAAACAAAATCAAGAGGCTTCAACTCAAATGGTTGAGATCTCAAATGGGATTGGTTAATCAAGAGCCGGTTCTCTTTGCCACTTCCATTAAAGAAAACATTCTTTTCGGCAAGGAAGAAGCTCCAATGGAACATGTTATAACTGCTTCGAAGGCTGCAAATGCTCACGACTTCATCATTAAGCTACCTGACGGATACAACACTCAAGTGGGCCAATTCGGAATCCAATTGTCAGGCGGGCAAAAGCAAAGGATAGCCATAGCAAGGGCCTTAATCCGGGACCCGAAAATCCTTCTCTTAGATGAAGCTACTAGTGCTTTAGATGCTGAATCCGAAAGAATTGTCCAAGATGCTCTAGACAAGGCTTCTCAGGGAAGGACTACACTCGTAATTGCCCACCGGCTCTCAACAATCCGGAGAGCCAATCGGATATTCGTTCTTCAATCTGGTCAAGTGATCGAATCTGGTTCTCACGAGGAGCTCGTTTCCAAAGGTGGGACCTACCACAACATGATCCAAATGCAACAACAATCTGCACCACAACATGAAGCTTCAGACTCTTCTCCCTATGATGCTACAATGATGAGACCTCGAACTCCTAGGACTCCTCTGGTCAGTCTAAGACTAAGCTGCCCGAGCAGCCCGGCTTACACTTTCAGCCCCATAGTCTCCGTGAGTGTGCCGTACTCATTCCAAATGGAGAACTATGACGATGAAATTTACAATAATGTAAGGCCGATAAAAGAAAACCCTTCGGGTTCGCAATGGCGTTTATGTAAACTAAACGCACCCGAGTGGAAGCAAGCAGTTTTTGGGTGTTTAGGTGCAGCAACCACCGGACTCACTCAACCAATCTATTCCTACTGCATAGGAACGGTTAGCTCGGTCTACTTCTTAAAAGACAATCATGCTCTCAAATCGGACATAAGATTCTATAGCATAGTCTTTCTAGGCCTCACAGTCGTTAGCTTCCTCTCAAACCTCTTCCAACATTACAATTTCGCCATAATGGGAGAGCGGTTGACCAAAAGAGTACGGGAAAAAATGCTCGGAAAAATGTTCACTTTCGAGATAGGGTGGTTCGATCAAGACGAGAACACAAGTGCAGCTATTTGTGCACGGTTAGCCACTGACGCAAACATGGTCCGGTCTCTTATTGCTGACCGAATGTCCTTACTGGTCCAGGTGGCTGTGAATGCCACGGTGGCCTTTGGGCTGGCTTTAGTGATCACGTGGAGGGTAGCTGTGGTAATAATCGCTATGCAGCCGGTAATTGTCGGAAGCTTTTATGCACGGAAGGTTCTATTGACAAGTATGTCAAAGAAAGCTCAGAAGGCGCAAAATGAAGGGAATCAATTGGCAAGCGAAGCTACGATCAACCATAGAACCATAACCGCATTTTCGTCGCAAGATAGAATACTTGGTCTTTTTCGAGGGGCAATGAAGAACCCGGAAAAGGAGAGTATAAAGCAATCATGGGCTTCGGGTTTAGTTCTGTTCAGCTCGCAATTTCTGAACACGACCAGTATTGCTATAACTCTTTGGTATGGAGGGAGGCTTATAAGTGAAGGAAAAGTAACCTCAAAGCAACTCTTTCAAGCCTTTTTTATCTTGATGACAACCGGGAAATACATAGCGGATGCAGGAAGTATGACTTCGGATTTAGCAAAAGGAGCCAAAGCAATAGGCTCCGTTTTTGCAATCTTAGATAGGCGGAGCGAAATAGAGCCTGATGAGAAAGAAGGTCTCAAAATCAGGAAGAGAATCAAAGGACATATCGAATTGAAAGATGTGTTTTTTGCATACCCATCTAGGCCTAATCAGATGATCTTCAAAGGGCTTGATCTAAACATAGAACCCGGAACGACGGTTGCTCTAGTCGGACAAAGTGGATCCGGAAAATCAACCGTAATTGGTTTGATCGAAAGATTTTACGACCCTTTAAAAGGATTCGTATTAATAGACGGAAATGATGTCAAGAGCTATAACTTGAGGAAGTTAAGATCACACATTGCACTAGTGAGTCAAGAGCCGACTCTCATTGCCGGAACGGTTCATGATAACATAACATATGGCCAAGAGGATTGTTCTGAAACTGAGCTCAAGAAAGCGGCAAAACTAGCGAATGCCCACGAATTCATAAGCTCGATGAAGGACGGATATGAGACATATTGTGGAGAGCGGGGAGTGCAGCTATCAGGAGGACAGAAGCAGAGGATTGCGATAGCGAGGGCAATACTAAAGAACCCGGAAATACTTTTGTTAGACGAAGCGACAAGCGCACTCGATAGTGTTTCGGAAAACTTGGTGCAAGAAGCGTTGGAGAAGATGATGATTGGAAGAACATGTGTGATAGTGGCTCACCGTTTGTCTACAATTCAAAAGGCAACCTCAATTGCTATTATAAGGAATGGTAAGGTTGTCGAGAAAGGGTCTCATTCCGTGTTGCTCGGTTTAGGACGCGGCGGAGAGTATTACTCTCTGATTAAGTTTCAAAAAGGCTAA 3714 44.94 MGKEGGLFRYADGLDKFLMVLGSLGSIGDGLMSPLTMLALSGMIDAYSGSDFSDHVVDKYSLRLLYIAIGVGISAFMEGACWTRTAERQTSRMRTEYLKSILQQEVGFFDKQAASSSSFQVVSSISSDSYLIQDTIAEKVPNTLAHLSSFIVCIPVAFMLSWRLAFSALPFSFMFLIPGVVFGKMMKGLGMEAKHAYGNAGGMAEQAISSIRTVYSYVGELQTIDKFSSALEKSTIFGIKLGFMKGLMMGSMAIIYATWAFQSWVGSVLVSERGEKGGRVFVSGICVILGGLSIMSVLPNLSFISEASIAGTRIFKMIDRVPDIDAEDGSGKSLQHVRGSIEFRQVEFSYPSRPDTLILQGLNLKVESGKTAGLVGGSGSGKSTVISLLERFYDPIKGDILLDGNKIKRLQLKWLRSQMGLVNQEPVLFATSIKENILFGKEEAPMEHVITASKAANAHDFIIKLPDGYNTQVGQFGIQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQDALDKASQGRTTLVIAHRLSTIRRANRIFVLQSGQVIESGSHEELVSKGGTYHNMIQMQQQSAPQHEASDSSPYDATMMRPRTPRTPLVSLRLSCPSSPAYTFSPIVSVSVPYSFQMENYDDEIYNNVRPIKENPSGSQWRLCKLNAPEWKQAVFGCLGAATTGLTQPIYSYCIGTVSSVYFLKDNHALKSDIRFYSIVFLGLTVVSFLSNLFQHYNFAIMGERLTKRVREKMLGKMFTFEIGWFDQDENTSAAICARLATDANMVRSLIADRMSLLVQVAVNATVAFGLALVITWRVAVVIIAMQPVIVGSFYARKVLLTSMSKKAQKAQNEGNQLASEATINHRTITAFSSQDRILGLFRGAMKNPEKESIKQSWASGLVLFSSQFLNTTSIAITLWYGGRLISEGKVTSKQLFQAFFILMTTGKYIADAGSMTSDLAKGAKAIGSVFAILDRRSEIEPDEKEGLKIRKRIKGHIELKDVFFAYPSRPNQMIFKGLDLNIEPGTTVALVGQSGSGKSTVIGLIERFYDPLKGFVLIDGNDVKSYNLRKLRSHIALVSQEPTLIAGTVHDNITYGQEDCSETELKKAAKLANAHEFISSMKDGYETYCGERGVQLSGGQKQRIAIARAILKNPEILLLDEATSALDSVSENLVQEALEKMMIGRTCVIVAHRLSTIQKATSIAIIRNGKVVEKGSHSVLLGLGRGGEYYSLIKFQKG 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7890099 7894390 - Conep19aG0111800.1 Cone19ag1084 459521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1084 1237 SUPERFAMILY ABC transporter transmembrane region 7 323 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone19ag1084 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 577 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 314 - -
Cone19ag1084 1237 SMART AAA_5 368 553 IPR003593 GO:0016887(InterPro)
Cone19ag1084 1237 SMART AAA_5 1023 1215 IPR003593 GO:0016887(InterPro)
Cone19ag1084 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1232 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 CDD ABC_MTABC3_MDL1_MDL2 341 578 - -
Cone19ag1084 1237 Gene3D ABC transporter type 1, transmembrane domain 7 585 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone19ag1084 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 306 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone19ag1084 1237 FunFam ABC transporter B family member 4 986 1237 - -
Cone19ag1084 1237 FunFam ABC transporter B family member 4 331 586 - -
Cone19ag1084 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Cone19ag1084 1237 Pfam ABC transporter 359 508 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 Pfam ABC transporter transmembrane region 674 943 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone19ag1084 1237 Pfam ABC transporter transmembrane region 22 275 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone19ag1084 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 578 IPR027417 -
Cone19ag1084 1237 Gene3D ABC transporter type 1, transmembrane domain 652 902 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone19ag1084 1237 Gene3D ABC transporter type 1, transmembrane domain 906 984 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone19ag1084 1237 PANTHER ABC TRANSPORTER B FAMILY 7 590 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone19ag1084 1237 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 Coils Coil 839 859 - -
Cone19ag1084 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 960 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone19ag1084 1237 SUPERFAMILY ABC transporter transmembrane region 659 979 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone19ag1084 1237 Gene3D - 331 579 IPR027417 -
Cone19ag1084 1237 Gene3D - 985 1236 IPR027417 -
Cone19ag1084 1237 ProSitePatterns ABC transporters family signature. 480 494 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone19ag1084 1237 MobiDBLite consensus disorder prediction 578 600 - -
Cone19ag1084 1237 CDD ABC_MTABC3_MDL1_MDL2 996 1235 - -
Cone19ag1084 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1235 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1084 K05658 - - csv:101217411 1695.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0891 Cone-Chr16:9263280 Cone19ag1084 Cone-Chr19:7890099 0 dispersed
Cone19ag1084 Cone-Chr19:7890099 Cone9ag0100 Cone-Chr9:435334 0 dispersed
Cone3ag0640 Cone-Chr3:3172659 Cone19ag1084 Cone-Chr19:7890099 3.26E-21 dispersed
Cone19ag1084 Cone-Chr19:7890099 Cone2ag0163 Cone-Chr2:854724 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g601 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02617 . . . . . . . Cone19ag1084 . . Lsi04g00630 Csa05g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136