Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1086 ATGAATCCGCTGTGCTGCATTGCGCCGGTTTCGATCGATCGGGAGAAATCACCTGGTGAGTGTCAGGTAGGGCTCGATGTTTCTGTCAAGACAGTGAGTTACGGGTCGAAACCGAGCTTTTCGGCTCAGGTTTCATCGGTAGGTACTGAATCGGATAAAGCTTCGGTCGCTGTGAGTCAAGAGGTTGAAGACTCGGTCAACGAAGCGAGAGAATCGAGAGTGTTTGGCGGAAATGGAGGTGTTAGTGGAAGTGTGTCTGGGATTTTGTATAAGTGGGTGAACTACGGGAAGGGGTGGAAGTCGAGGTGGTTCGTGCTTGAAGATGGTGTGCTTTCGTACTATAAGATACATGGTCCGGACAAGATCTTGATGAGTCCGGCTAGGGAGAAGGGGGTTAGGGTGATCGGAGAGGACTCTTTGAGGTATGTTAGGAAGGCTAATTGGGGTAGTTCTCGGCTGGGGTTGCCGATGAAGCAGTGCAAGCCTTTTGGAGTAGTTCATTTGAAGGTCTCTTCATTTCGTGCCAGCAAATCAGATGATAAGAGGCTTTCCATATTCACCGGAACAAAAACACTTCATTTGCGATGTGTATACAAAGAGGACAGAGCTGCATGGATCGAAGCCCTGCTGTCTGCCAAAGAACTTTTCCCTAGAGCATTAACTAGCACTGATTTTGCATCTTCTGAAGATGTAGTCGTTTCAACAGAGAATCTACGGCTGCGGTTGCTGCAGGAAGGGATAGGTGAGAATGTCATCCAAGATTGTGAGTCAATTATGCTCCTAGAATTCTCTATGCTGCAGAACCAATTGAAGTCTCTCCAACATAAACATTTTGCATTATTAGAAACATTGAGACAATTGGAGACTGAGAAGATAGAGCTTGAAGCTACTGTCGTGGATGAAACAAAGGAACGTGAGTCATGTTGTGGACAAGGGAACAGAAGATTCAGCGATTTCTACTCTGTCATGTCAGAGGGAAGTGCAACTGATTTGGATGTTGAAAATGAAAGTCAAGATGGTGGAGATGTGGAATCGGACGATGATGATGGCGCTTATTTTGATACAAATGACTTTTGGTCTTCAGAAGCTTTAAGAAGTGCTTCTTACCGGAGTAGGGAATCTTTGGTAAATGGCAGCATATCCGACGGTGACTCTTTCTTTTCCGATCATTTATATGGAGCTGAGAAGCAGGTTAGGGCAATCAAGTATCCATATGTCAAAAGAAGGGATAACTTGCCCGAACCAAGGGACAAAGAAAAACCGATTGGTTTGTGGTCAGTTATCAAGGATAATATTGGAAAGGACTTATCTGGAGTTTGTCTCCCTGTTTACTTTAATGAACCGCTCTCTTCTTTGCAAAAGTGTTTTGAAGATCTAGAGTATTCCTACTTGGTTGATCAGGCATTGGAATGGGGAAAGCAGGGTAAAGACTTGATGAGAATCCTAAAAGTTGCAGCTTTTGCGGTTTCAGGATATGCTTCAACACAGGGACGGCAGTGCAAGCCTTTTAATCCTCTCCTAGGGGAGACCTATGAGGCTGAATATCCAGACAAAGGACTGCGTTTTTTCTCTGAGAAAGTGAGTCACCATCCAATGATTGTTGCCTGTCACTGTGAGGGAAGAGGCTGGAAGTTTTGGGCAGATTCTAATCTTAAAGGGAAATTTTGGGGACGATCCATTCAGCTTGATCCCGTAGGTGTCCTTACTCTACAGTTCGAGGACGGGGAGACTTTCCACTGGAGCAAAGTCACCACTTCTATTTACAACATTATTCTAGGTAAAATCTATTGTGATCATTATGGAACCATGCGCATCAAGGGCAGTGGTAACTATTCCTGCAAGCTCAAGTTTAAGGAGCAGTCAATCATTGACCGAAACCCACATCAGGTTCATGGATTTGTACAAGACAACAGGACGGGAGAGAAAGTAGCGATGTTAATGGGGAAGTGGGATGAGGCAATGTACTATGTAATGGGAGATCCGACCACAAGGCCAAAGGGGTATGATCCGATGACAGAAGCCGTATTGCTATGGGAAAGAGACAAATATGTAACTAAGACAAGATATAATCTCTCCCCTTTTGCTATATCCTTAAACGAACTCACCCCTGGCTTGTTGGATAAACTGCCTCCAACTGACTCAAGGCTGAGGCCGGATCAACGGCATTTAGAAAATGGAGAGTATGAGTTGGCAAATGCAGAGAAGCTAAGGCTCGAACAGTTGCAGAGACAGGCCCGAAAGTTGCAGGAGAGAGGGTGGCAGCCAAAGTGGTTTCGCAAGGATGAAGATGGTTGTTATCGATACAGCGGAGGTTATTGGGAAACAAGAGATGAAAAGACGTGGGATGGTAGTTCTGATATATTTGGTCAGAGTTGCAGTGATTTGCCTTCATGTTCTGGAGAAGAGGAGTAA 2412 44.98 MNPLCCIAPVSIDREKSPGECQVGLDVSVKTVSYGSKPSFSAQVSSVGTESDKASVAVSQEVEDSVNEARESRVFGGNGGVSGSVSGILYKWVNYGKGWKSRWFVLEDGVLSYYKIHGPDKILMSPAREKGVRVIGEDSLRYVRKANWGSSRLGLPMKQCKPFGVVHLKVSSFRASKSDDKRLSIFTGTKTLHLRCVYKEDRAAWIEALLSAKELFPRALTSTDFASSEDVVVSTENLRLRLLQEGIGENVIQDCESIMLLEFSMLQNQLKSLQHKHFALLETLRQLETEKIELEATVVDETKERESCCGQGNRRFSDFYSVMSEGSATDLDVENESQDGGDVESDDDDGAYFDTNDFWSSEALRSASYRSRESLVNGSISDGDSFFSDHLYGAEKQVRAIKYPYVKRRDNLPEPRDKEKPIGLWSVIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQALEWGKQGKDLMRILKVAAFAVSGYASTQGRQCKPFNPLLGETYEAEYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFHWSKVTTSIYNIILGKIYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLMGKWDEAMYYVMGDPTTRPKGYDPMTEAVLLWERDKYVTKTRYNLSPFAISLNELTPGLLDKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKLQERGWQPKWFRKDEDGCYRYSGGYWETRDEKTWDGSSDIFGQSCSDLPSCSGEEE 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7906599 7911264 - Conep19aG0112000.1 Cone19ag1086 459523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1086 803 ProSiteProfiles PH domain profile. 82 214 IPR001849 -
Cone19ag1086 803 SMART PH_update 83 216 IPR001849 -
Cone19ag1086 803 Pfam Pleckstrin homology domain 90 209 - -
Cone19ag1086 803 Gene3D - 509 675 - -
Cone19ag1086 803 SUPERFAMILY Oxysterol-binding protein-like 418 790 IPR037239 -
Cone19ag1086 803 MobiDBLite consensus disorder prediction 328 347 - -
Cone19ag1086 803 SUPERFAMILY PH domain-like 85 213 - -
Cone19ag1086 803 Gene3D - 720 796 - -
Cone19ag1086 803 Coils Coil 731 751 - -
Cone19ag1086 803 Gene3D - 82 216 IPR011993 -
Cone19ag1086 803 FunFam oxysterol-binding protein-related protein 1D isoform X1 509 682 - -
Cone19ag1086 803 Pfam Oxysterol-binding protein 424 776 IPR000648 GO:0008289(InterPro)
Cone19ag1086 803 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 82 763 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Cone19ag1086 803 Coils Coil 270 304 - -
Cone19ag1086 803 FunFam Oxysterol-binding protein-related protein 2A 720 790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1086 K20456 - - csv:101204827 1373.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1264 Cone-Chr17:9107629 Cone19ag1086 Cone-Chr19:7906599 7.38e-311 dispersed
Cone19ag1086 Cone-Chr19:7906599 Cone20ag0464 Cone-Chr20:2407934 5.97e-315 dispersed
Cone13ag1096 Cone-Chr13:8872117 Cone19ag1086 Cone-Chr19:7906599 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32