Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1088 ATGGCTACTGTATTTTTGCACAGTTCAAACCTCGTTCTTCTGCCATTTTCTGACCATTTCAGAACGCCAACTCCGCTCCTTCACCGGCACAATTATCATAGTTTCTCCCACCGCCACCACCAAATATCATTTCTTCGCGGCTCGCTATCTGTGGCTAGGTTCGGGTTCAAACAGGGTTTCTTCCCTGACCCGGACAGTGCGGAGGGCGTAGTTAGGGACTTGCTTGGCAAAACTGAGAGCTTAATTTATACGATTGCAGATGCGGCAGTTTCGGCTTCTGCTTCCTCTGAAGCTGTTGGAACGTCGAAACAGAGTAATGATTGGTTTTCTGGGATTACTAATTACATGGAAGCTGTTCTCAAGATTCTGAAGGATGGACTTTCTACTTTACATGTTCCTTATGCTTATGGATTTGCCATTATACTCCTGACAGTTCTTGTTAAGGCGGCCACATTTCCTTTGACTAAGAAACAGGTTGAATCTGCGATGTCTATGCGATCTTTGCAACCTCAAATAAAGGTTATTCAACAACGGTATGCTGGGAATCAGGAGAGAATTCAACTTGAAACTGCTCGATTATATAAGTTAGCTGGCATAAACCCGTTGGCTGGGTGCCTGCCTACACTTGTCACAATTCCAGTGTGGATTGGACTATATAGGGCTCTCTCGAATGTGGCAGATGAGGGACTCCTTGCTGAAGGTTTCTTCTGGATACCTTCCCTGGCCGGACCAACTACAATAGCTGCTCGTCAAAGTGGCAGTGGTATCTCTTGGCTTTTTCCATTCAAAGATGGTCAACCTCCTCTTGGATGGTCAGATACTTTCGCATATCTTGTCTTGCCTTTGTTGCTTGTCATCTCCCAGTACATCTCGGTCCAAATAATGCAATCATCACAGAATAATGATCCGAACATGAAGACTTCTCAAGCCCTCACAAAGTTACTCCCTCTAATGATCGGTTATTTCGCTCTTTCAGTTCCTTCTGGTCTAAGCCTCTATTGGTTCACTAATAACATCCTGAGCACAGCCCAACAAGTATGGCTACAAAAGTTAGGGGGTGCAAAAATCCAAGTGAAGGAATTAACTGATGATGTCATCAAGCAAGACCAATTAGAGATTCCGAAATCCATATCTGAACCAAAATTGATCGAAAAGGAATCTAAACGATCAGAGAAATTGACCGCTGATGGGATACGACCTGGTGAAAGATTTAGACAGCTAAAAGAGCAGGAGGCAAGGAAAAGACGGGAACGAGAAGAAAAAGAAAAGAGGAAAGCTCAAGAAGCAGCAGCAGTGCAAACAAATCAAATGACAAGTGGAAGCAATCTTGTTGTTGAAAGAAGTGAAGAAATTCATTCTGAGACTAATAACAATAAGTCCTCAAATGTTGGAGTCAATGGAAATATATCCAGGGAGGAATCAAACAAAGATGAGAAAACAACAACTGCATTTAAAACTGAAGTTTCTATTATTAACAACAGGGATGAAGAATTGCAGTCCTCGCAGCTTACAGAGAAGGCAGTAGCTGAAGTGCATACTACTTCAACCACTACAGGTGTCTCCAATTCGGGAGATAACAAAGATCAAGCTGGCCAAGACATCTTCCTCTTAAAATCACATTTCAAAATCCGGGCACTGCAAAAGACTTCAGCAGTGCCCATGGACGCCACAACAAGCGGGACCCCCTCTATACAACAATACCATAACATAACTGATCAGTCAATGACAACTACTATTGTAACAACCCCTACGGTCCCACCATTTCCTAGACAGACCAGACATTGCTTTGGGGACTCAATCCCAGGCGAATTCCCCTTAGCCGCCAATCCCTCCATAGTCCTTCATGTCCTCACAGCATGTCACTTGGAACCTCAAGACCTAGCCAAACTAGAGGCTACTTGTTCGTTTTTTAGACACCCCGCGAATTTCGCTCCGGACTATGAGTTGTCCATTTCGGAGCTTGCCGCGTTGGACATGTGTCAGAAGCGGGCAATATTTATGCCTATGACCCTGGAAGAGCGTTGTGAGTTGAAGCAAAAATGTGGGGGTTCATGGAAACTTGTCTTGAGGTTCTTGCTAGCAGGAGAAGCCTGTTGCCGGAGGGAGAAATCTCAGGCCATAGCAGGGCCCGGTCACAGCATTGCCGTGACTTCAAAAGGAGACGTTTACTCATTCGGGTCTAATAGCGCGGGACAGCTCGGACAAGGCACCACTGAAGAGGAATGGCGACCCTGCCAAATCAGGTCCTTGCATGGGATTAAAATTATCCAAGCAGCGGCAGGGGCTGGGAGAACTATGCTAATAAGTGATGCCGGAAGGGTTTATGCATTTGGCAAGGACTCGTTTGGAGAAGCAGAGTATGGAGTTGAAGGAGCTAAGATGACTACCACTCCTCAGTTGGTCCAATCCTTGAAGAATATATTTGTGGTGCAAGCTGCAATAGGGAACTTCTTCACAGCAGTATTGTCAAGAGAGGGCCGGGTTTACACGTTTTCTTGGGGTGTTGATGCGAAACTTGGTCACCAGACTGAACCAAATGATGTGGAGCCTCATCCCTTGTTGGGTGCACTTGAGAACATACCGGTCGTGCAAATTGCAGCTGGTTATTGCTACCTTCTCGCTCTGGCTTGTCAACCTAGCGGCATGTTGGTATACTCTGTTGGCTGTGGACTGGGCGGAAAGCTCGGGCACGGCTCAAGAACTGATGAGAAGTACCCACGATTGGTTGAACAGTTTCAGAACCTGAACCTTCAACCAATGGTGGTTGCAGCCGGTGCATGGCATGCAGCTGTGGTGGGCCGTGATGGTCGAGTCTGCACCTGGGGGTGGGGCCGCTATGGGTGCTTGGGCCACGGAAATGAAGATTGTGAATCCGTTCCTAAGGTGGTTGAAGCACTAAGAGATGTTAGAGCTGTCCATGTGGCCACAGGGGATTACACAACTTTTGTGGTTACAAATGATGGGGATGTTTATTCTTTCGGGTGTGGAGAATCCGCCAGTCTCGGACACAATACTGTTACTGATGGACAGGGAAATAGACATGCAAATGTTTTGAGCCCGAAGCTCGTCTCCTCGCTAAAGGAAGTTAATGAGCGGGTGGTACAGATCAGCCTCACTAATTCGATTTACTGGAATGCTCACACTTTTGCTCTGACCGAATTGGGCACGTTATTTGCATTTGGGGCAGGAGATAAAGGGCAGCTGGGCATAGAGCTTGCTGCAAATCAAACCGAAAGGGGAAATCCCGAGCGGGTCGATGTTGATCTAAGTTAA 3273 46.41 MATVFLHSSNLVLLPFSDHFRTPTPLLHRHNYHSFSHRHHQISFLRGSLSVARFGFKQGFFPDPDSAEGVVRDLLGKTESLIYTIADAAVSASASSEAVGTSKQSNDWFSGITNYMEAVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMSMRSLQPQIKVIQQRYAGNQERIQLETARLYKLAGINPLAGCLPTLVTIPVWIGLYRALSNVADEGLLAEGFFWIPSLAGPTTIAARQSGSGISWLFPFKDGQPPLGWSDTFAYLVLPLLLVISQYISVQIMQSSQNNDPNMKTSQALTKLLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAKIQVKELTDDVIKQDQLEIPKSISEPKLIEKESKRSEKLTADGIRPGERFRQLKEQEARKRREREEKEKRKAQEAAAVQTNQMTSGSNLVVERSEEIHSETNNNKSSNVGVNGNISREESNKDEKTTTAFKTEVSIINNRDEELQSSQLTEKAVAEVHTTSTTTGVSNSGDNKDQAGQDIFLLKSHFKIRALQKTSAVPMDATTSGTPSIQQYHNITDQSMTTTIVTTPTVPPFPRQTRHCFGDSIPGEFPLAANPSIVLHVLTACHLEPQDLAKLEATCSFFRHPANFAPDYELSISELAALDMCQKRAIFMPMTLEERCELKQKCGGSWKLVLRFLLAGEACCRREKSQAIAGPGHSIAVTSKGDVYSFGSNSAGQLGQGTTEEEWRPCQIRSLHGIKIIQAAAGAGRTMLISDAGRVYAFGKDSFGEAEYGVEGAKMTTTPQLVQSLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGVDAKLGHQTEPNDVEPHPLLGALENIPVVQIAAGYCYLLALACQPSGMLVYSVGCGLGGKLGHGSRTDEKYPRLVEQFQNLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEDCESVPKVVEALRDVRAVHVATGDYTTFVVTNDGDVYSFGCGESASLGHNTVTDGQGNRHANVLSPKLVSSLKEVNERVVQISLTNSIYWNAHTFALTELGTLFAFGAGDKGQLGIELAANQTERGNPERVDVDLS 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7916613 7924743 - Conep19aG0112200.1 Cone19ag1088 459525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 925 943 IPR000408 -
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 722 738 IPR000408 -
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 828 842 IPR000408 -
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 772 788 IPR000408 -
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 812 828 IPR000408 -
Cone19ag1088 1090 PRINTS Chromosome condensation regulator RCC1 signature 983 1004 IPR000408 -
Cone19ag1088 1090 MobiDBLite consensus disorder prediction 455 470 - -
Cone19ag1088 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 922 932 IPR000408 -
Cone19ag1088 1090 Gene3D - 701 879 IPR009091 -
Cone19ag1088 1090 Gene3D - 880 1089 IPR009091 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 826 878 IPR000408 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 988 1054 IPR000408 -
Cone19ag1088 1090 MobiDBLite consensus disorder prediction 429 446 - -
Cone19ag1088 1090 MobiDBLite consensus disorder prediction 382 481 - -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 882 935 IPR000408 -
Cone19ag1088 1090 Coils Coil 404 436 - -
Cone19ag1088 1090 CDD 5TM_YidC_Alb3 137 350 IPR047196 -
Cone19ag1088 1090 NCBIfam membrane protein insertase YidC 136 350 IPR028055 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 936 987 IPR000408 -
Cone19ag1088 1090 Pfam 60Kd inner membrane protein 136 350 IPR028055 -
Cone19ag1088 1090 SUPERFAMILY RCC1/BLIP-II 704 1008 IPR009091 -
Cone19ag1088 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 987 1037 IPR000408 -
Cone19ag1088 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 935 984 IPR000408 -
Cone19ag1088 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 884 932 IPR000408 -
Cone19ag1088 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 772 822 IPR000408 -
Cone19ag1088 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 719 768 IPR000408 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1055 1090 IPR000408 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 720 771 IPR000408 -
Cone19ag1088 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 772 825 IPR000408 -
Cone19ag1088 1090 MobiDBLite consensus disorder prediction 382 428 - -
Cone19ag1088 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 781 1085 IPR051210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0342 Cone-Chr18:1681920 Cone19ag1088 Cone-Chr19:7916613 1.01E-132 dispersed
Cone19ag1088 Cone-Chr19:7916613 Cone6ag1247 Cone-Chr6:9942555 2.99E-32 dispersed
Cone13ag1100 Cone-Chr13:8887270 Cone19ag1088 Cone-Chr19:7916613 0.00E+00 transposed
Cone13ag1098 Cone-Chr13:8881444 Cone19ag1088 Cone-Chr19:7916613 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1088 - - - 0.0