Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1094 ATGGAAAATAGTGGGAAATCAGTCAAAGTAGAACCCCCTAATAATAATGGGAGCTCGATGCAGTATCAATGGAGGAGGGAGTTTCCCTCGAACAACAACAACAAGAAGTATTGTTACACTTTAAGCACAGAGGAGAGGAGAAGGTACTTGGTGAGAGCAACATTTCAGTATGGTAGTCTGAAAAACAATGAAGACACATACCCAAAATTTGAGCTTTATCTGGATGCAACGAAGTGGGCCACGGTTACAGTCGTAGATGCTTCTAGGGTTTATGTGAAGGAGATGATCATTAGGGCTCCTTCAAACTCCATTGATGTGTGCTTGTGCTGTGCCACAACTGCGTCACCTTTCATCTCCACTCTTGAGCTTAGGCCCTTTAATCTTTCAATGTACCCAGATGATCCGTATGATAGAATTTGGGATTCAGATATGGAGAAGAGGCCAAATTTTCTTGTAGGGGTGGCCCCAGGTACAGAAAGGATCAATACATCAAAGAGCATAGATATAAGGACAAGAGAGTATCCGCCCATTAAGGTAATGCAAACTGCGGTTATAGGCACAAAGGGAGTTCTTAATTATAGACTTAATTTGGAAGACTTTCCTGCCAATGCAAGAGCCTATGCATACTTTGCAGAAATCCAAGACTTGGGTCCAAATGAAACTCGGAAATTTGAATTGCAGCAACCATATATACCGGACTATAGTAATGCAGTTGTAAATATAGAAGAAAATGCTAATGGAAGTTACACACTTTATGAGCCTAGTTACATGAATGTGAGTTTAGATTTTGTACTCTCTTTCTCCTTTGTCAAAACCCGGGATTCTACTAAAGGGCCGATTTTGAACGCCATGGAAATAAGCAGATATCTGCAGATTGGCTCTAAGACAGACAGGCAAGATTTGAATGTCGTGAATGCCTTGCGGGTAATGTCGGGAGAGGGCCTTTCAATAAATGAAGGCGATGCTTGTGTTCCGACACAGTGGGAATGGATTACTTGTAGCTTAGCCCATCCACCAAGAATAACAAAAATTGCGCTTTCGGGAAAGAATTTGCAGGGGGAAATCCCACTCGACCTTAACAACATGGATGGTTTGACAGAACTGTGGTTAGACAGTAACTCTCTCACCGGTCCACTACCTGACTTAAGAAGTCTCGTAAACTTAAGGATTCTGCATTTAGAGAATAACAATTTGACAGGTCTGTTACCTCCTTCCCTCGGAAGTTTACCGAATTTAAAAGAACTGTACATTCAGAACAACTCTTTCACTGGTGAAATACCTCCTAACTTATTGAAAGGGAAACTGATATTCAATTATGAAGGTAACAGAAAACTACACAAGAGGACACACAGCAAGATTAATGCTAAGATCATACTTGGAGCTTCTGCCGGACTGCTTGCGATTCTAATACTTATTTTCATCACAAGTTTATTTCTACTTAACAAAATTCGACAAAAGCCATCTCATTCTGACGAGAAAAACAGTGACAAAGGTGATTCTCTACGTACCAACGGCAACACCAAGCCTTCAACAAATTATTCCAGTGTGCTGGTGGAAGAAGGTGTAGCCTACTACATAACATTATCGGAGCTGGAAGAAGCGACAAATCATTTTACGAAGAAAATTGGGAAGGGAAGTTTTGGGTCCGTCTATCATGGAAAAATGAAGGATGGGAAGGAAGTAGCCGTTAAGATAATGGCTGATTCATCTACCTATGCTAATCATCAGTTTATGACTGAGGTATCTCTTTTGTCAAGAATTCATCATAGGAATTTGGTTCCTTTGATCGGATACTGCAAAGAAGAACATCAAAGAATTATCGTTTATGAGTATATGCACAATGGAACCTTACGAGATCACATACACGGTTTTTCCGATCGAGAAAGATTAGACTGGCTATCTCGCCTTCAAATTGCAGAAGATGCAGCTAAAGGGCTCGAATATTTACACACGGGATGCAATCCAAGTATCATTCATAGAGATGTGAAAACGAGCAATATCCTTCTAGACAAAAATATGAGAGCCAAAGTTTCCGACTTTGGACTTTCCCGGCAAACGGAGGAAGATTTAACACATATATCAAGCATGGCTCGAGGAACCGTAGGATACCTAGATCCCGAGTACTATGCTAATCAGCAGTTGACCGAAAAAAGTGATGTGTACAGTTTCGGAGTTGTTCTTCTAGAACTAATATCTGGAAGAAAACCCGTCTCAACTGAAGACTATAGTAGCACCGAAATGAACATTGTTCATTGGGCAAGGGCATTGGTCAGAAAAGGGGACGTGAGGAGCATTGTTGATGCGGTGTTAGTAGAGAGTGCGAAAATCGAATCAGTTTGGAGGGTGGCAGAGATTGCAATCCAGTGTGTGGAGCAACATGGAGTTTCTAGGCCGAGGATGCAGGAGATAATTCTGGCAGTTCAAGATGCGATCAAGATTGAAAACGGAAGTGATCAAGTGGACCGGAAGTTACGTCTGGGTAGTACTTCGGAAGGGAAAACGTCGAGGAAAACTCTGTTGACAACATTTCTGGAAATAGAGAGCCCTGATCTATCAAATGGGGGCCTTTTCCCATCTGCAAGATAG 2586 41.61 MENSGKSVKVEPPNNNGSSMQYQWRREFPSNNNNKKYCYTLSTEERRRYLVRATFQYGSLKNNEDTYPKFELYLDATKWATVTVVDASRVYVKEMIIRAPSNSIDVCLCCATTASPFISTLELRPFNLSMYPDDPYDRIWDSDMEKRPNFLVGVAPGTERINTSKSIDIRTREYPPIKVMQTAVIGTKGVLNYRLNLEDFPANARAYAYFAEIQDLGPNETRKFELQQPYIPDYSNAVVNIEENANGSYTLYEPSYMNVSLDFVLSFSFVKTRDSTKGPILNAMEISRYLQIGSKTDRQDLNVVNALRVMSGEGLSINEGDACVPTQWEWITCSLAHPPRITKIALSGKNLQGEIPLDLNNMDGLTELWLDSNSLTGPLPDLRSLVNLRILHLENNNLTGLLPPSLGSLPNLKELYIQNNSFTGEIPPNLLKGKLIFNYEGNRKLHKRTHSKINAKIILGASAGLLAILILIFITSLFLLNKIRQKPSHSDEKNSDKGDSLRTNGNTKPSTNYSSVLVEEGVAYYITLSELEEATNHFTKKIGKGSFGSVYHGKMKDGKEVAVKIMADSSTYANHQFMTEVSLLSRIHHRNLVPLIGYCKEEHQRIIVYEYMHNGTLRDHIHGFSDRERLDWLSRLQIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDKNMRAKVSDFGLSRQTEEDLTHISSMARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSTEDYSSTEMNIVHWARALVRKGDVRSIVDAVLVESAKIESVWRVAEIAIQCVEQHGVSRPRMQEIILAVQDAIKIENGSDQVDRKLRLGSTSEGKTSRKTLLTTFLEIESPDLSNGGLFPSAR 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7940086 7944400 - Conep19aG0112800.1 Cone19ag1094 459531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1094 861 SMART LRR_typ_2 409 433 IPR003591 -
Cone19ag1094 861 SMART LRR_typ_2 385 408 IPR003591 -
Cone19ag1094 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1094 861 CDD STKc_IRAK 542 804 - -
Cone19ag1094 861 SUPERFAMILY Protein kinase-like (PK-like) 510 804 IPR011009 -
Cone19ag1094 861 FunFam serine/threonine-protein kinase PBS1-like 506 611 - -
Cone19ag1094 861 Pfam Malectin-like domain 3 131 IPR024788 -
Cone19ag1094 861 SMART serkin_6 536 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1094 861 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 333 429 - -
Cone19ag1094 861 Gene3D Ribonuclease Inhibitor 301 451 IPR032675 -
Cone19ag1094 861 MobiDBLite consensus disorder prediction 1 21 - -
Cone19ag1094 861 PANTHER OS07G0107800 PROTEIN-RELATED 383 813 - -
Cone19ag1094 861 Pfam Protein tyrosine and serine/threonine kinase 537 804 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1094 861 Gene3D Phosphorylase Kinase; domain 1 500 611 - -
Cone19ag1094 861 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524(InterPro)
Cone19ag1094 861 MobiDBLite consensus disorder prediction 487 512 - -
Cone19ag1094 861 ProSiteProfiles Protein kinase domain profile. 536 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1094 861 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 612 820 - -
Cone19ag1094 861 Gene3D Transferase(Phosphotransferase) domain 1 612 828 - -
Cone19ag1094 861 SUPERFAMILY L domain-like 324 431 - -
Cone19ag1094 861 Pfam Leucine Rich repeats (2 copies) 387 421 IPR025875 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1094 Cone-Chr19:7940086 Cone19ag1280 Cone-Chr19:8708467 4.88E-183 dispersed
Cone19ag1281 Cone-Chr19:8712022 Cone19ag1094 Cone-Chr19:7940086 4.96E-27 dispersed
Cone4ag1198 Cone-Chr4:10092783 Cone19ag1094 Cone-Chr19:7940086 1.29E-70 dispersed
Cone5ag0200 Cone-Chr5:832971 Cone19ag1094 Cone-Chr19:7940086 1.32E-66 dispersed
Cone13ag1106 Cone-Chr13:8909099 Cone19ag1094 Cone-Chr19:7940086 4.20E-75 transposed
Cone13ag1105 Cone-Chr13:8907553 Cone19ag1094 Cone-Chr19:7940086 2.11E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82408 PF11805 DUF3326 1.70E-154 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1094 - - - 0.0