Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1096 ATGGCAAATGGCTGGTTGTCTCCTCGAAACTGCGCGTTTCCGGCGGGTCTCCGAGTTCTCGTCGTTGACGATGATCCAACATGGCTCAAAATTCTTGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTAACTATATGCTGTTTGGCAAGAGAGGCTCTAACCTTACTCCGAGACCGAAAAGACGGATACGACATTGTAATCAGTGATGTAAACATGCCCGACATGGATGGCTTTAAGCTTCTCGAACTTGTCGGACTCGAAATGGATCTTCCCGTCATAATGATGTCAGTTGATGGAGAAACGAGCAGGGTGATGAAAGGAGTCCAACATGGAGCATGCGACTATCTTCTCAAGCCGATAAGAATGAAAGAACTCAGAAACATATGGCAGCACGTTTTCCGGAAGAAGAGACATGATGTAAGAGATTTTGAAAGTATTGAAGGTTTTCACATGATAACAAATACTATATCAGATCAGTCGAATAAGGAACCGTTTCTTCGAGTAGAAGAATCGATTTCAACGAAGAAAAGAAAAGATTTTGATCAGCACGACGATAGAGATTTTTCTGATGCTTCTTCTATGAAGAAAGCTCGAGTAGTTTGGACCGTAGATCTTCATCAGAAATTTGTAAAAGCAGTAAACCAGATTGGGCTCGACAAAGCAGGCCCGAAGAAAATACTTGATCTAATGAATGTCCCACAATTGACGAGAGAAAATGTGGCTAGCCACTTGCAGAAGTACCGTCTCTACTTGAGTAGGCTCCAAAAAGAGAGCAGCCCCGAAGCTTCTTTTCCGGAAGCTTTATGTGCTGGAGAAAACATATATCCCGGCATTGTTTCCGAGTCCATGTTAGAGCTGGAAAGAGCTCCTCCTCAAGGTGTTCATGATCCTAAGAAGATATGGAATCCAACGATTGAATTCAATCCTCCTTTTGGATCACTTAATCCCTACATCCAAACAGAGGACTTAATCCCAAGATCACTGGAAAATAGCTTCAATCAGCTCAACAAATTACAACCGGTTTCGCTCATCAAGTCCGGACCTTCCGTAAAAGAGGATATGGAAACCCCGGCTTTCAATCTGTGCTGCATAACTGATTTGGAAGGTGGGTTATCATCATTACCTACTCTCGAAGATCTTCAGGGCGATGGTTATGATAATATGAAGAATCTTCCACATGGGAATTATATAGAATTTCCCGAGAACTTTGATCCGGGAATTCTTATGGAATTTCCTAATCAATTTGGTTATGATTACTCTTCTTATGACATGGCGGAATATTCAGTGAAAGATGGTCTCTTCATTGTATGA 1311 41.8 MANGWLSPRNCAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTICCLAREALTLLRDRKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKRHDVRDFESIEGFHMITNTISDQSNKEPFLRVEESISTKKRKDFDQHDDRDFSDASSMKKARVVWTVDLHQKFVKAVNQIGLDKAGPKKILDLMNVPQLTRENVASHLQKYRLYLSRLQKESSPEASFPEALCAGENIYPGIVSESMLELERAPPQGVHDPKKIWNPTIEFNPPFGSLNPYIQTEDLIPRSLENSFNQLNKLQPVSLIKSGPSVKEDMETPAFNLCCITDLEGGLSSLPTLEDLQGDGYDNMKNLPHGNYIEFPENFDPGILMEFPNQFGYDYSSYDMAEYSVKDGLFIV 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7950857 7953104 + Conep19aG0113000.1 Cone19ag1096 459533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1096 436 Gene3D - 193 255 - -
Cone19ag1096 436 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Cone19ag1096 436 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Cone19ag1096 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Cone19ag1096 436 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Cone19ag1096 436 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 291 IPR045279 GO:0009736(InterPro)
Cone19ag1096 436 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Cone19ag1096 436 NCBIfam myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677(InterPro)
Cone19ag1096 436 SUPERFAMILY CheY-like 16 143 IPR011006 -
Cone19ag1096 436 Gene3D - 17 186 - -
Cone19ag1096 436 FunFam Two-component response regulator 192 255 - -
Cone19ag1096 436 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Cone19ag1096 436 CDD REC_typeB_ARR-like 19 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1096 Cone-Chr19:7950857 Cone7ag1672 Cone-Chr7:11219297 9.83E-89 dispersed
Cone13ag1108 Cone-Chr13:8915265 Cone19ag1096 Cone-Chr19:7950857 6.57E-276 wgd
Cone19ag1096 Cone-Chr19:7950857 Cone8ag0716 Cone-Chr8:7215291 3.67E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45355 PF11805 DUF3326 2.10E-154 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1096 K14491 - csv:101204370 408.683