Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1101 ATGAAGATTGAAGTTGAAGTAACTTCAAAAGATATCATCAAACCATCTTCTTCGACACTCGATCACCTTCGCCGTTACAAGCTTTCTTTTCTTGATCAAGTCACTGTTGATGTCTATAACCCTATGATTTACTTCTACTCACCAAATGATATTGAAACCCAATTCAAAACCCTTGATGAAGTTTCAAACCAACTTAAGAGATCCCTCTCCAAGTTCTTAACCCATTACTACCCGCTTGCCGGACGTGCGAATTACGATGATTTCTTCATTGATTGCAATGATGAAGGCGTCCACTTCTTTGAATCTAGAGTTAATTGTCAGCTCTCAGATTTTATACACAACTCGGAGCCAATCGATCTTAACAAGCTTCTCCCGTTTGAATTGGATAAACTTAGTGAAATAAACATGGGGGTCCAACTAAACATGTTTGAATATGGTGGAATTGCTCTTGCTATATGCATCTCCCACAAGATTGGAGATGCCTTATCTTTTTTTGTTTCCAATAATGCTTGGGCAGCGCTTTCTCGAGGAAATTTGGATGCCGTGAGTGCTCATTTTCGTTCGGCTGAGCTCTTCCCTCCGAGAAACTCACAATCTTTGTTCAACACAAGAAGTGGTATAACAAGAGATAGAGTCGTAAAAAGGTTTGTGGTTAAAGCTTCAAAAGTAGAAGCAATTAGGGCAAAATATGCCAAGAGCAAGGCCTTGGAAAACGAAAGACGCCCATCAAGAGTTGAAGCGTTATCCGTCTTTATATATAGCCGTTTTCTAGCCGCTGTCAAGAATGAATCTGAATCTTCAGGCCCTAACAAGTTTTACCAGATTTTGCATCCTGTAAACATACGTCCAAGGCTCGACCCACCACTTCCCGAATATGCTTTTGGAAACTATTATAGGTTCACAATGAAAGTTCCATCTAAAGAGATATTGGAAGAAGAATATTGCTATGGATTGGTGAAGGAGGTAAGGGATGACATAGATAAAATAAACAAGGAGTTATTGAAACAATTCCAAATGGAAGAAGGTGATGGTAAAAAGCCATTGGAAACTATCAAGGAGAGATCTGCAAGTTTTGCTAGAGGAGAGATGATATCATGTGCTTTCACTAGTTTGTGCAGGTTCCCTCTCTATGATGCTGATTTTGGTTGGGGAAAGCCTATTTGGGTTGCTTCACCTGCTCTCACTTTTACAAATCTTGTTGTCTTTATTGATACAAAAGCTGGTGATGGAATTGAAGTGTATATTCACTTGAAGGAGGAACACATGGCTAAGTTGGTAGCTGATGAGGAGTTCCTCAAGTATGCTTCTCTTACAGTGTAA 1320 39.62 MKIEVEVTSKDIIKPSSSTLDHLRRYKLSFLDQVTVDVYNPMIYFYSPNDIETQFKTLDEVSNQLKRSLSKFLTHYYPLAGRANYDDFFIDCNDEGVHFFESRVNCQLSDFIHNSEPIDLNKLLPFELDKLSEINMGVQLNMFEYGGIALAICISHKIGDALSFFVSNNAWAALSRGNLDAVSAHFRSAELFPPRNSQSLFNTRSGITRDRVVKRFVVKASKVEAIRAKYAKSKALENERRPSRVEALSVFIYSRFLAAVKNESESSGPNKFYQILHPVNIRPRLDPPLPEYAFGNYYRFTMKVPSKEILEEEYCYGLVKEVRDDIDKINKELLKQFQMEEGDGKKPLETIKERSASFARGEMISCAFTSLCRFPLYDADFGWGKPIWVASPALTFTNLVVFIDTKAGDGIEVYIHLKEEHMAKLVADEEFLKYASLTV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7967049 7968368 + Conep19aG0113500.1 Cone19ag1101 459538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1101 439 Gene3D - 210 433 IPR023213 -
Cone19ag1101 439 Pfam Transferase family 4 431 - -
Cone19ag1101 439 PANTHER F21J9.9 4 436 - -
Cone19ag1101 439 Gene3D - 1 201 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1101 K13065 - - csv:101207639 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1114 Cone-Chr13:8931825 Cone19ag1101 Cone-Chr19:7967049 1.44E-279 dispersed
Cone13ag1115 Cone-Chr13:8937144 Cone19ag1101 Cone-Chr19:7967049 1.62E-124 dispersed
Cone13ag1116 Cone-Chr13:8943862 Cone19ag1101 Cone-Chr19:7967049 3.29E-112 dispersed
Cone19ag1101 Cone-Chr19:7967049 Cone20ag0030 Cone-Chr20:171451 2.05E-65 dispersed
Cone19ag1101 Cone-Chr19:7967049 Cone19ag1102 Cone-Chr19:7970191 2.05E-200 tandem
Cone3ag1377 Cone-Chr3:32775159 Cone19ag1101 Cone-Chr19:7967049 4.63E-71 transposed
Cone13ag1113 Cone-Chr13:8928510 Cone19ag1101 Cone-Chr19:7967049 1.74E-110 wgd
Cone19ag1101 Cone-Chr19:7967049 Cone8ag0718 Cone-Chr8:7240553 4.19E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1131 . Blo16g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1115 Cone19ag1101 . . Lsi04g00647 . . Cme10g00627 . . . . . . . Bma06g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001045 1 3 2 1 1 3 2 3 3 4 2 3 2 4 4 1 3 4 2 3 4 2 3 4 2 5 3 2 3 2 81