Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1104 ATGGCTCCGAAACCTAAAGACAAATCAAAACCATCTCCTGCGGCATCGCAGCCTCCCCCTCCGATCGATGATCTGTTCACTTCGCTTAACAAACTCATCCAGCAATTTGAATACGGCAAAGCCGTCGAAGTTGCAGATCAAGTTCTGTCGGCTGCTCCGAACGATGAGGACGCGCTTCGATGCAAGGTTGTGGCCTTGATCAAAGACGATAAGATCGATGATGCTCTTAAGACAATTCAATCTTCCCAGAAGCTTCCTATTGATTTCAGTTTCTTCAAGGCATACTGCTTATACAGAAAGAATAGGTTAGATGAAGCTTTGGAGTCCCTGAAGAGGCAAGAGAGAACATCTGCAACTATGCTGTTAGAATCCCAGATTCTGTATCGATTAGGGAAAATGGATGCTTGTGTGGAAATCTATCAGAAGCTTCTGAAGTCGAAGATTGAAAATTTAGAGACAAATATAGTTGCTGGTTTGATTGCAGCTGGGAGAGCTTCTGAAGTACAAGGGATAATTGAGTCGATGAGGGTAAAACCAACTAGCAGCTTTGATTTGGCGTACAACACTGCTTGTTCTTTAGTTGAATTGAATAATTATACAGATGCGGAACAACTCTTGCTGTCGGCTCGGAGAATTGGTCAGGAAACACTGGTGGAAGAGAACTGGGCAGATGAGGATATTGAAACTGAATTGGCACCAATAGCTGTCCAGTTGGCCTATGTTCAGCAGCTTCTTGGGCACACACCAGAAGCCATTGAAGCTTACAAAGAGATCATTAATCGAAATTTGGAAGATGAATCATCCCTGGCAGTGGCAGTGAACAATCTTATTTCAATGAAAGGTCCTAAAGATGCTTCAGATAGCCTAAAGAAACTTGATAAGTTGAAGGAGAAAGATGCACCAAGCTTCCAGCTTGATCATAAGCTGGACTTGAAGATTTCATCAAAGCAAAAGGAAGCAATATATGCAAATCGGGTTCTTCTACTTCTTCATGCAAATAGAATTGACCAGGCTCGAGATCTTGTAGCTTCTCTATCAGACATGTTTCCGAACAGCTTGACTCCCATACTTCTTCAGGCTTCAGTCCTGGTAAGAGAAAACAAGGCTGGAAAAGCAGAAGAACTTCTCGGTCAATTTGCCGAGAAGTTCCCTGATAAGTCCAAGGAAGTTCTCTTAGTTAGGGCACAGATTTCTGCTGCTGCTAATCACCCTCAAATTGCAGCTGATTCCTTGACAAAAATACCTGATATCCAGCATATGCCTGCCACTGTAGCCACCATTGTTACTCTCAAAGAACGAGCTGGAGATATAAATGGTGCTTCTGATGTGCTTGATTCTGCAATCAAATGGTGGTCAAATTCCATGACAGATGACAACAAGCTTAATCTCATAATGCAAGAGGCAGCTTCCTTCAAGCTCAGGCATGGTCGTGAAGAGGAAGCTTCAAAACTATATGAGGACCTTGTTAAAAGCCATGGAAGCATAGAAGCATTAGCTGGACTGGTTAATACAGTTGCCCGTGTTGATGTTAGCAAGGCAGAATCTTATGAGAAGCAGCTGAAGCCATTACCAGGACTGAAAGGAATCGATGTGAATAGTCTGGAGAAGACTTCTGGTGCAAATGCGGATGATTCTGCTAACGTTTCAATCTCAGAAGCTTATGAGGAGGGGAAGAACAAGACAAAAGCGAAGAGAAAGAGAAAGAGAAAGCCAAGGTACCCTAAAGGGTTTGATCCAGCTAACCCGGGTCCGCCACCTGATCCCGAAAGATGGCTTCCGAGGAGAGAGAGGTCAAGTTTCAGACCGAAAAGAAAGGATAAGAGGGCGGGTCAGGTGAGAGGCTCTCAAGGTGCAGTAAGTAGAGTGAAAAACGAAACGGGTGCTTCTGGTTCTGGGTCTGGAAATTCAAATGCCAAAGGAAACCAGGTTAATAATACTTCGAAAGCAGGCCAAGGAAGCAGTTCCAAAGGGGCATCGCAAAATGCAGGTGTGGAGCTATCTAAGGCTTCATCAAAGTCGTCGAAAAAGAAGTCTAGGAGATAA 2043 43.91 MAPKPKDKSKPSPAASQPPPPIDDLFTSLNKLIQQFEYGKAVEVADQVLSAAPNDEDALRCKVVALIKDDKIDDALKTIQSSQKLPIDFSFFKAYCLYRKNRLDEALESLKRQERTSATMLLESQILYRLGKMDACVEIYQKLLKSKIENLETNIVAGLIAAGRASEVQGIIESMRVKPTSSFDLAYNTACSLVELNNYTDAEQLLLSARRIGQETLVEENWADEDIETELAPIAVQLAYVQQLLGHTPEAIEAYKEIINRNLEDESSLAVAVNNLISMKGPKDASDSLKKLDKLKEKDAPSFQLDHKLDLKISSKQKEAIYANRVLLLLHANRIDQARDLVASLSDMFPNSLTPILLQASVLVRENKAGKAEELLGQFAEKFPDKSKEVLLVRAQISAAANHPQIAADSLTKIPDIQHMPATVATIVTLKERAGDINGASDVLDSAIKWWSNSMTDDNKLNLIMQEAASFKLRHGREEEASKLYEDLVKSHGSIEALAGLVNTVARVDVSKAESYEKQLKPLPGLKGIDVNSLEKTSGANADDSANVSISEAYEEGKNKTKAKRKRKRKPRYPKGFDPANPGPPPDPERWLPRRERSSFRPKRKDKRAGQVRGSQGAVSRVKNETGASGSGSGNSNAKGNQVNNTSKAGQGSSSKGASQNAGVELSKASSKSSKKKSRR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7976280 7979750 + Conep19aG0113800.1 Cone19ag1104 459541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1104 680 FunFam Signal recognition particle subunit SRP72 21 168 - -
Cone19ag1104 680 FunFam Signal recognition particle subunit SRP72 311 508 - -
Cone19ag1104 680 Pfam Putative TPR-like repeat 58 149 IPR031545 -
Cone19ag1104 680 PANTHER SIGNAL RECOGNITION PARTICLE 72 1 679 IPR026270 GO:0005786(PANTHER)|GO:0006614(InterPro)|GO:0006614(PANTHER)|GO:0008312(PANTHER)|GO:0043022(PANTHER)
Cone19ag1104 680 MobiDBLite consensus disorder prediction 617 669 - -
Cone19ag1104 680 MobiDBLite consensus disorder prediction 551 680 - -
Cone19ag1104 680 Pfam SRP72 RNA-binding domain 547 602 IPR013699 GO:0006614(InterPro)|GO:0008312(InterPro)|GO:0048500(InterPro)
Cone19ag1104 680 SUPERFAMILY TPR-like 25 262 IPR011990 GO:0005515(InterPro)
Cone19ag1104 680 Gene3D Tetratricopeptide repeat domain 21 170 IPR011990 GO:0005515(InterPro)
Cone19ag1104 680 Gene3D Tetratricopeptide repeat domain 171 320 IPR011990 GO:0005515(InterPro)
Cone19ag1104 680 MobiDBLite consensus disorder prediction 1 23 - -
Cone19ag1104 680 Gene3D Tetratricopeptide repeat domain 321 498 IPR011990 GO:0005515(InterPro)
Cone19ag1104 680 PIRSF SRP72 14 680 IPR026270 GO:0006614(InterPro)
Cone19ag1104 680 SUPERFAMILY TPR-like 180 409 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1104 K03108 - - csv:101207391 886.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1119 Cone-Chr13:8948814 Cone19ag1104 Cone-Chr19:7976280 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1135 . . . . . Bpe10g00775 . Bma15g00247 Cmo04g01908 . . . . . Sed01g2093 . Cpe01g01594 Bhi07g01862 Tan04g0103 Cmetu10g0385 Lac13g0093 Hepe10g1549 . . Cla05g02631 Cam05g2824 Cec05g2859 Cco05g2892 Clacu05g2827 Cmu05g2675 Cre05g2792 Cone13ag1119 Cone19ag1104 . . Lsi04g00648 . . Cme10g00628 . . . . . . . . . . . Cma04g01810 . Car04g01823 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007046 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 4 2 1 37