Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1108 ATGACCTTGCAATCCATTATTCGCACCAAAAGCATTCGAAGACTACTTGATCCTTGTTTATTCCAAGCCTTTTTCCATGCCGCCTCTTCTCCTTCTCCATTGGATTCTTATGACTTCCTAAAGGTTGATGGAGCAAGTGATGATACTGAAGCTTTTCAGTCTCTCTTGCGTGACCAAGCATGCAATAGCATACAACCCTCCCATGAACTTGTCTACAAGCTGCTATGCCGGTTCAAGGATGATTGGAAATCAGCATTGGGTGTTTTTAGATGGGCTGGGTCAAAATCGGGCTATAAACACAATCCCAAATCATATGATTTGATAGTGGATACTTTAGGAAAAACAAAGCAAATGGAGAAGATGAGAGCTTTGTTAGGAGAAATGAACGAGGTCCGTCTCGTCACACTCAATACCATAGCTAAGGTTATGAGAAGGTTTGCAGGTGCAGGCAAATGGGAAGATGCCACACGTACATTCGACGATTTGGGAACTTTCGGGTTGGAGAAGAACACGGAATCGATGAACCTATTGTTGGACACCCTTTGCAAAGAGAGGAAAGTTGAACAAGCCCGAGATATCTTTTATAAGCTGAAATTACATATTTCTCCAAGCGCTCACACATTTAACATTTTCATTCACGGGTGGTGCAAAGTGAATAGAGTAGAAGAAGCACATTGGACTATTGAAGAAATGAAGGGGCAGGGTTTTCTTCCTTGTGTCATAAGTTATTCAACTATCATCCAATTTTATTGCCACCATGGCAATTTCGAAAAAGTCTATGAGATGCTTGATGAAATGGAAGCTCAAGGATGTAAACCGAATGTCGTTACGTACACTACTTTTATGTGCTATCTAGCAAAATCGGAGAAGTTCAAGGAAGCTCTAGAAGTTTCCAAGAGGATGGAATTATCTGGGTGCAAGCCCGATACTCTTTTTTACAACTCATTGATCCACATATTAGGAAAAGCCGGTAAAGTAGAAGAAGCTGTTCGTCTGTTTGAGGTGGAGATGCGGAGAAATGGGACCCCACCAAATACATCGACATACAATACGATGATTGCGATGTTTTGTTATAACAGTCGAGATCAGATGGCCTTAAATCTACTCAAGGAGATGGAGAATTCAGAGGTATGTATAAAACCTGATGTACAGACGTATTACCCTTTGCTTAAATCTTGTTTAAAATCCGGAAAGATAGAGAGTAGGTTGAGAGAGTTATTGGATGATATGGTCAATAAACATCATCTCAGTCTTAATCTATCAACTTATGCGCTCTTGATTCATGGGCTCTGTCGGGCGAATAGATGTAAGTGGGCTTACGAGTTGTTTGAGGAGATGGTTGGGAAGGAAATAATGCCGAGATATGTGACATGTCGTTTGCTTTGGGACGAGGTTAAGCTAAACAATATGAATGAAGAGGCTGATAAGATTGAAGATTTCATGAAGAAATTGTAG 1455 40.69 MTLQSIIRTKSIRRLLDPCLFQAFFHAASSPSPLDSYDFLKVDGASDDTEAFQSLLRDQACNSIQPSHELVYKLLCRFKDDWKSALGVFRWAGSKSGYKHNPKSYDLIVDTLGKTKQMEKMRALLGEMNEVRLVTLNTIAKVMRRFAGAGKWEDATRTFDDLGTFGLEKNTESMNLLLDTLCKERKVEQARDIFYKLKLHISPSAHTFNIFIHGWCKVNRVEEAHWTIEEMKGQGFLPCVISYSTIIQFYCHHGNFEKVYEMLDEMEAQGCKPNVVTYTTFMCYLAKSEKFKEALEVSKRMELSGCKPDTLFYNSLIHILGKAGKVEEAVRLFEVEMRRNGTPPNTSTYNTMIAMFCYNSRDQMALNLLKEMENSEVCIKPDVQTYYPLLKSCLKSGKIESRLRELLDDMVNKHHLSLNLSTYALLIHGLCRANRCKWAYELFEEMVGKEIMPRYVTCRLLWDEVKLNNMNEEADKIEDFMKKL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7994042 7996292 + Conep19aG0114200.1 Cone19ag1108 459545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1108 484 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 336 481 IPR051222 -
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Cone19ag1108 484 Pfam PPR repeat family 170 217 IPR002885 -
Cone19ag1108 484 Pfam PPR repeat family 308 357 IPR002885 -
Cone19ag1108 484 Pfam PPR repeat family 238 282 IPR002885 -
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 276 310 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 206 238 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 422 451 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 348 378 IPR002885 -
Cone19ag1108 484 NCBIfam pentatricopeptide repeat 313 346 IPR002885 -
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 344 IPR002885 -
Cone19ag1108 484 Gene3D Tetratricopeptide repeat domain 39 190 IPR011990 GO:0005515(InterPro)
Cone19ag1108 484 Gene3D Tetratricopeptide repeat domain 378 483 IPR011990 GO:0005515(InterPro)
Cone19ag1108 484 Gene3D Tetratricopeptide repeat domain 197 300 IPR011990 GO:0005515(InterPro)
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cone19ag1108 484 Gene3D Tetratricopeptide repeat domain 301 377 IPR011990 GO:0005515(InterPro)
Cone19ag1108 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Cone19ag1108 484 Pfam PPR repeat 416 447 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1108 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1124 Cone-Chr13:8966858 Cone19ag1108 Cone-Chr19:7994042 8.94E-69 dispersed
Cone13ag1127 Cone-Chr13:8976297 Cone19ag1108 Cone-Chr19:7994042 8.94E-69 dispersed
Cone16ag0657 Cone-Chr16:8029413 Cone19ag1108 Cone-Chr19:7994042 1.59E-16 dispersed
Cone19ag0266 Cone-Chr19:1828246 Cone19ag1108 Cone-Chr19:7994042 7.31E-17 dispersed
Cone19ag1108 Cone-Chr19:7994042 Cone6ag0533 Cone-Chr6:2646295 1.25E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30