Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1109 ATGCACAACGGATCGAATCCGAACGTGATCGATAACTTGTGGAAAGATTACAAGAAGTGGAAGAGAGTAGGGAACTCGACAACATCTTATGTAGGCATGACCTGTGTTGGAATTTCAGTTAAGCAACTTGTTGCCGGTGAGAATAATTCCATTCAGGAGATCAAACATTTCCAGCAGATGGAAAGACTTCAGTTGCTTGTGATTGTGTCTGGATATTACGACGTGGAGAAGAATTTCAAGAGGGAGATTCTAGTGGTGGCTGAATCTAGGGAGGTTATAATCAGTTTGATGTCTTTCTTTGATTCTAATGCTTCTAGAATGCCTCTCAGCGTTCTGCATCAAACAGAAGTCAGAGATAACGGAAGCAGAGGGAGAGGCAGGTCAAAAGAAACCCTAAAAGAGCGGGCTTCAGAGAACGCCATGGAAGGGGAAATAGTGGCAGAATTCAAGAAGGGCTGTTTTACTCTCGACGAACAAGACGAAGTTCTCAAGAAATGTGTTACTTTCTGCACCAATTACAATCTCAAGCCGTCGGATCTGGTTTCCTGCTGGGAGGTTTACTATCTCAACAGGCAATTGGACGAGTCAGTGGTGCGCGATGAAGAGATGGATGGGTTTTGTCAGCATCTACAAAATGAGCAAAGGGAAGCTGTTTTAAAAGAGGAAGCGAATCTGCATATTTACTCGCGCAAAGATGTGGACATGATTTTATATGACGATGATGAAGAATCTAAAGAAGATATACTTCAGACTCCAACAGGAAAATCTAACACTCTCTGTTCAGAGCCATTTGATTCATCGCCTCACATGAATGGAACCCTATTTTCCTCTGAAAGGTTAAGGCACGTGACCCCCTTCGGACAAAGAACTGATAAGTTGGCTGTGAAAGTCAGCATTAATAGTATGCCTGATACAGAGCTGGTAAAAATGGAAGATGATGATGAGCTTAATGAGGATGACATTATCAGGAAAGTTCCTACACCCAAAAGGTGTTCCTTGGTAGTGCATGAGTCAGGACCTCAACCTCGTTGTAGATTCATGTATGACAGAATAGAAGATAAGTTTAATGCTCTTGAAAACCGAATTAAAAGGCACACTACTGCACTTGTTGCATCGGGGCAGTATGAAGAACCAATTGATCCTTCTGTTGCTTCACAGAAAAGCGTATTTACGGTTGGCATGATCTGTAATGAAGGAGAAGGCTGTTTGAATGATAAGTCAACCTTATTGCAGAGCAGTGTTGAGCATTCAGGAGGGCAACGTGTCCGCTTAGAATTACAAAAGCTTAGCCAGTTTTCAGTATTTCCTGGTCAGGTTGTGGGTATTGAAGGGCATAATCCTAGTGGACACTATTTGATTGCATCAAAAGTAGTAGATGCTGTTCCTTTGTCTGTCTCTGCTGATGTGAATTTGCATCCAGCAAAGAAGCAAGCCTTGGATACGGAGATCCAGCCAACTGATCAATCCTCTACACGGGAAGAATTATCAGTAATAATAGCATCAGGTCCTTTTTCAACGACGGACAACTTTTTATATGAGCCTCTGACAGAGTTACTTGCATATGCCAAAAGAAAGCTTCCTCAGCTGCTAATATTGCTGGGACCATTTGTTGATTCTGAACATCCAGATGTTAAGAGAGGAACTGTGGACAGGAGCTTTGATGAAATATTCAACATTGAAATTCTAAAAAGGTTACAAGGTTATGCAGAACACGTGGGTAATAATACACGAGTGCTTCTTGTGCCATCTATAAGGGATGCTAATCATGACTTCGTTTTCCCTCAGCCTGCTTTTGAAATTCATCCAACTGATCTCAGACATCAGATAACCAGTCTCACCAACCCGGGTATATTTGAGGCAAATCAGGTGAAGATAGCTTGCTGCTCCACGGACATTCTTAGACATCTTAGTGGAGAGGAGATGTCACGCAATCCGACAAGTGGAAATCCTAGTGATCGCTTGAGTAGACTTGCAAACCATCTACTTCGGCAGCGTAGCTTTTATCCTCTGTATCCACCTGCGGAAGGGATTCCACTGGATTTTTCACTTAGCCCAGAAGCTCTCAATATCTCTGTTATCCCAGATATTCTTATCCTTCCTTCGGATATGAAGTACTTTGTAAAGGTGCTGACCCTTGGGGAAGGAGTTGAAGGAGAAGAACAAGTCAAGTACATATGTCTGAATCCAGGAAGATTGGCCAAGGGAGAAGGAGGAGGTACTTTTGCTGAGCTTAAATACTTCGGAAATCCCGACAAAATCAACGCTTCTATCATCGGAATTTGA 2283 42.53 MHNGSNPNVIDNLWKDYKKWKRVGNSTTSYVGMTCVGISVKQLVAGENNSIQEIKHFQQMERLQLLVIVSGYYDVEKNFKREILVVAESREVIISLMSFFDSNASRMPLSVLHQTEVRDNGSRGRGRSKETLKERASENAMEGEIVAEFKKGCFTLDEQDEVLKKCVTFCTNYNLKPSDLVSCWEVYYLNRQLDESVVRDEEMDGFCQHLQNEQREAVLKEEANLHIYSRKDVDMILYDDDEESKEDILQTPTGKSNTLCSEPFDSSPHMNGTLFSSERLRHVTPFGQRTDKLAVKVSINSMPDTELVKMEDDDELNEDDIIRKVPTPKRCSLVVHESGPQPRCRFMYDRIEDKFNALENRIKRHTTALVASGQYEEPIDPSVASQKSVFTVGMICNEGEGCLNDKSTLLQSSVEHSGGQRVRLELQKLSQFSVFPGQVVGIEGHNPSGHYLIASKVVDAVPLSVSADVNLHPAKKQALDTEIQPTDQSSTREELSVIIASGPFSTTDNFLYEPLTELLAYAKRKLPQLLILLGPFVDSEHPDVKRGTVDRSFDEIFNIEILKRLQGYAEHVGNNTRVLLVPSIRDANHDFVFPQPAFEIHPTDLRHQITSLTNPGIFEANQVKIACCSTDILRHLSGEEMSRNPTSGNPSDRLSRLANHLLRQRSFYPLYPPAEGIPLDFSLSPEALNISVIPDILILPSDMKYFVKVLTLGEGVEGEEQVKYICLNPGRLAKGEGGGTFAELKYFGNPDKINASIIGI 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7999790 8004855 + Conep19aG0114300.1 Cone19ag1109 459546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1109 760 MobiDBLite consensus disorder prediction 118 137 - -
Cone19ag1109 760 FunFam DNA polymerase alpha subunit B 140 214 - -
Cone19ag1109 760 Gene3D - 646 756 - -
Cone19ag1109 760 Gene3D - 477 645 - -
Cone19ag1109 760 Coils Coil 348 368 - -
Cone19ag1109 760 Pfam DNA polymerase alpha subunit B, OB domain 357 458 IPR054300 -
Cone19ag1109 760 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 143 747 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Cone19ag1109 760 Gene3D - 141 215 IPR043034 -
Cone19ag1109 760 Pfam DNA polymerase alpha/epsilon subunit B 497 708 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone19ag1109 760 Gene3D DHHA2 domain 6 140 IPR038222 -
Cone19ag1109 760 FunFam DNA polymerase alpha subunit B 478 643 - -
Cone19ag1109 760 Pfam DNA polymerase alpha subunit B N-terminal 145 190 IPR013627 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1130 Cone-Chr13:8984052 Cone19ag1109 Cone-Chr19:7999790 3.79E-170 transposed
Cone13ag1129 Cone-Chr13:8982100 Cone19ag1109 Cone-Chr19:7999790 2.10E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1109 K02321 - rcu:8278457 865.144