Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1110 ATGGATATCAGCCATGGAAATAATTACATCCCAACATTCTTCACCATGTTTCTTCTCGTATATCTGTTTGCATACTTTGTTCTATGTCCAAAGTGGGGGCCGAAACACAGGCTACAAGCTTCAAGCTGTTTCATATCTCTAGCTCATGGAGCTCCTGCAGTTGTCATGGCAACTCATGCAATAATTACATCAACCTCCTCTTCCTCCCTCTTCTCGGATACTACTTTTATTTTCTCTTCTCCGAACACGAAGTTCCAAAACCTCGTACTCGAATACAGCATATCATACTTCTTGTCGGATCTCCTTCACCTCATACTATTCTACCCTCATGACATCCTCTTCATATCTCACCATCTAGCCACCCTCTATGTCTTCACCACGTGTCGGTTTCTGATCGGCCATGGAGCAGTCTCGATCCTCATGCTTCTCGCTCTGGCCGAGGTGACCAGTCCTTGTCAGAACGTTTGGAGTCTCGCTGGTTTAAGGAAGGGTAGTTCGACTACTTATGAGGAGAAGATTGCGACTAAGGTTTATGAGTTTTTGTCTCCTTGGTTTTATGGGCTTTATAGTGTTTGTAGAGTGGTTTTGGGGCCAGTTTTTGTGTGGAAGATGCTGGTTTTTTATGCGGGTGGTGGAGGTGATGGTGTGCTTGGTAACTGGGCTTGGATTTCTTGGATGCTGGTGATTGTTTGTGCTGTTTTAGTTAGTATTCTGTGGGTTGTCAATAATTGGGTAGATTGGTTTAGGAGCAGAAGTCACAAAGAAAGCAAGGTGAATTAG 780 44.1 MDISHGNNYIPTFFTMFLLVYLFAYFVLCPKWGPKHRLQASSCFISLAHGAPAVVMATHAIITSTSSSSLFSDTTFIFSSPNTKFQNLVLEYSISYFLSDLLHLILFYPHDILFISHHLATLYVFTTCRFLIGHGAVSILMLLALAEVTSPCQNVWSLAGLRKGSSTTYEEKIATKVYEFLSPWFYGLYSVCRVVLGPVFVWKMLVFYAGGGGDGVLGNWAWISWMLVIVCAVLVSILWVVNNWVDWFRSRSHKESKVN 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8005163 8005962 - Conep19aG0114400.1 Cone19ag1110 459547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1110 259 Pfam TLC domain 41 241 IPR006634 GO:0016020(InterPro)
Cone19ag1110 259 ProSiteProfiles TLC domain profile. 35 252 IPR006634 GO:0016020(InterPro)
Cone19ag1110 259 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 7 256 IPR040327 -
Cone19ag1110 259 SMART lag1_27 35 252 IPR006634 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0072 Cone-Chr11:317933 Cone19ag1110 Cone-Chr19:8005163 2.54E-77 dispersed
Cone18ag1405 Cone-Chr18:9560704 Cone19ag1110 Cone-Chr19:8005163 7.27E-82 dispersed
Cone13ag1131 Cone-Chr13:8987230 Cone19ag1110 Cone-Chr19:8005163 1.62E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1164 . . . . Bpe13g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1131 Cone19ag1110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013585 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 26