Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1117 ATGGATATCACTGAGGTAGAAGAAAATTTCTTTGCAGCTAGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCACTTTCTGCAGTATATTGCAAAGTACATTCGATTTTCCCTTCTTTGGAAGCAGTACGGCCGGGGAGCAAATCCGGCATTATGGCATTATGTTCACTGCATATGGCACTTGAGAAGATCAAGAATGTTCTTCAACATTGCTCAGAAAGTAGTAAACTCTACTTGGCTATCACTTCTGAGGCTGTACTCCTAAAATTTAAGAAGGCAAAATGTTTTCTTCAAGATAGTCTAAGAAGTGTTAAAGATATCGTCCCACAATCGGTTGGTTATCAGATTGAAGAGGTACTGGCTGAGATCGAAGAAACTGTGATTTCTCTGGATCCTCTAGAGAAGCAAGTTGGTGACGATCTTATTGCCTTGATCCAGCAAGGGAATGATTTTAACAACTCTACTGACATTAATGAGCTAGAGACCTTCTACCAGGCAGCTACTAGACTCGGAGTAACCTCCTCGAGAACAGCTCTTACCGAGAGAAGAGCTCTCAAGAAACTCATAGAACGAGCTCGAGCAGAAGAAGACAAGAGGAAAGAATCAATCGTGGCTTACCTCTTACATCTCATGAGGAAATACTCCAAACAATTTAGGACTGATAAATTCGACGAGAATGAGCAGGGTTCCGGCCCTTGTACTCCCACTCTTCTAGGCGCAAATGAGCCCGATTTCAATTTACGCGCTTTTGAACATCAGCTTTCAAAGCTTAGTTCTATAAACTCTAAACAAAATACTAGAAGATCAAGGCAGCTGTCCCTGCCCCTGCCGCCTGAGGAGCTGAGGTGTCCAATATCACTTCAGCTTATGTTTGATCCAGTCATCATTGCTTCCGGGCAAACATATGAAAGAATCTGCATTGAGAAGTGGCTCAGTAATGGGCATCACACCTGCCCGAAAACCCAACAGAAACTCTCTCATCTCTCTTTGACACCTAATTACTGTGTTAAGGGTCTCATTACTAGTTGGTGTGAACATAATGGAGTCTCTGTTCCTGATGGGCCCCCAGATTTTCTCGATCTCAATTACTGGAGGCTTTCGTTGTCTGAATCCGAGTCTGCTAATTCAAAGTCATTGGACAGTGTTGGCTCCTGCAAGGTGAAGAGTGGTAAAGTGGTTCCATTAGAGGAGAGTGGTATTACTGACGAGGTCCAAGGAAATGAATATGAACCGGATAATCATACCGCATCTGTACAGGAGGAAGAACCTGAACCTGATAATGTGGTCCCCAGTTATATGAATTTTCTTGATGCCCTGAATAAAGGGAGAGAGTTGGGGAAAAAGTGTAAGCTGGTGGAGAAGATTAGGTATGTGCTGAAGGATGATGAGGAGGCGAGGGTTTTTATGGGAGCCAATGGCTTTGTGGAAGCACTGTTGCAGTTTGTGACTTTAGCTGTGCGTGAAGGGAATACAAGGGCTCAGGAGAGTGGAGCCATGGCTCTCTTCAACCTTGCGGTTAACAATAACAGAAACAAGGAGTTGATGCTGGAAGCTGGATTGATCCCACTGTTAGAGGAAATGATCTCGAACTCTGATTCACATGGATCCGCAGCCGCACTATACATGAACCTCTCTTGTCTCGAAGCAGCAAAACTAATCATTGGATTCAGTGAAGCCGTCCCTTTCTTAACTCGACTTCTTACTGATAATTCCGAACCCCAATCCAAGCTCGACTCTCTTCACGCCCTCTACCACCTCTCCACCATTCCCTCCAATATCCCAAATCTTCTCTCCTCTAACGTTGTCTCTGGCGTTCTGTCCCTCCTTGCTTCTGAAAATAACCGCCATTCATGGACTGAGAAATGCATAGCCGTCTTGATCAACCTGGCATCGAGTCAACCCGGAAGAGATGAACTGATAACAGCTCCGGGTGTTATTGGCCAGCTTGCTACGATAGTGGACAGTGGGGAAGCTATCGAACAGGAGCAAGCTGTGTCTTGTCTTTTGATTTTGTGTAATGGGAATGAGAAATGCAGTGATATGGTCTTGCAGGAAGGGGTGATTCCTGGATTGGTGTCGATGTCTGTTAATGGGACCTCTAGAGGGAAAGAGAAGGCTCATAGGCTTCTGATGTTGTTCAGGGAGCAGAGGCAAAGAGAGCAACTACAGCCACAACAACGGTCAGAGGATGATAATAGTCGTAGTTATCGGGGGGGATGCCATGAGAATCCGTTTGTTGTTGATTCTGATACTAGGTCGTTGTCTAAATCTACTTCTAGAAGGAGATCATTAGGGAGAGCTTTTAGTTTTCTGAAGAAGAGCAAGAGCTACTCATTTTACCGGTTCTGA 2349 44.83 MDITEVEENFFAASDAKLHGGMCKALSAVYCKVHSIFPSLEAVRPGSKSGIMALCSLHMALEKIKNVLQHCSESSKLYLAITSEAVLLKFKKAKCFLQDSLRSVKDIVPQSVGYQIEEVLAEIEETVISLDPLEKQVGDDLIALIQQGNDFNNSTDINELETFYQAATRLGVTSSRTALTERRALKKLIERARAEEDKRKESIVAYLLHLMRKYSKQFRTDKFDENEQGSGPCTPTLLGANEPDFNLRAFEHQLSKLSSINSKQNTRRSRQLSLPLPPEELRCPISLQLMFDPVIIASGQTYERICIEKWLSNGHHTCPKTQQKLSHLSLTPNYCVKGLITSWCEHNGVSVPDGPPDFLDLNYWRLSLSESESANSKSLDSVGSCKVKSGKVVPLEESGITDEVQGNEYEPDNHTASVQEEEPEPDNVVPSYMNFLDALNKGRELGKKCKLVEKIRYVLKDDEEARVFMGANGFVEALLQFVTLAVREGNTRAQESGAMALFNLAVNNNRNKELMLEAGLIPLLEEMISNSDSHGSAAALYMNLSCLEAAKLIIGFSEAVPFLTRLLTDNSEPQSKLDSLHALYHLSTIPSNIPNLLSSNVVSGVLSLLASENNRHSWTEKCIAVLINLASSQPGRDELITAPGVIGQLATIVDSGEAIEQEQAVSCLLILCNGNEKCSDMVLQEGVIPGLVSMSVNGTSRGKEKAHRLLMLFREQRQREQLQPQQRSEDDNSRSYRGGCHENPFVVDSDTRSLSKSTSRRRSLGRAFSFLKKSKSYSFYRF 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8027342 8031518 - Conep19aG0115100.1 Cone19ag1117 459554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1117 782 Gene3D - 412 726 IPR011989 -
Cone19ag1117 782 SUPERFAMILY ARM repeat 457 707 IPR016024 -
Cone19ag1117 782 CDD RING-Ubox_PUB 278 330 IPR045210 -
Cone19ag1117 782 PANTHER U BOX DOMAIN-CONTAINING 22 718 - -
Cone19ag1117 782 Pfam U-box domain 278 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag1117 782 Coils Coil 175 195 - -
Cone19ag1117 782 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 644 IPR000225 GO:0005515(InterPro)
Cone19ag1117 782 MobiDBLite consensus disorder prediction 718 758 - -
Cone19ag1117 782 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag1117 782 MobiDBLite consensus disorder prediction 397 426 - -
Cone19ag1117 782 MobiDBLite consensus disorder prediction 718 737 - -
Cone19ag1117 782 SUPERFAMILY RING/U-box 277 353 - -
Cone19ag1117 782 SMART Ubox_2 280 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone19ag1117 782 FunFam RING-type E3 ubiquitin transferase 276 350 - -
Cone19ag1117 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1349 Cone-Chr17:9445026 Cone19ag1117 Cone-Chr19:8027342 3.84E-71 dispersed
Cone19ag1117 Cone-Chr19:8027342 Cone9ag1553 Cone-Chr9:11266669 4.02E-80 dispersed
Cone10ag0123 Cone-Chr10:628654 Cone19ag1117 Cone-Chr19:8027342 2.87E-13 wgd
Cone12ag0712 Cone-Chr12:6553517 Cone19ag1117 Cone-Chr19:8027342 0 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone19ag1117 Cone-Chr19:8027342 0 wgd
Cone18ag0170 Cone-Chr18:886262 Cone19ag1117 Cone-Chr19:8027342 1.13E-14 wgd
Cone19ag1117 Cone-Chr19:8027342 Cone3ag0136 Cone-Chr3:756341 7.10E-13 wgd
Cone19ag1117 Cone-Chr19:8027342 Cone5ag1317 Cone-Chr5:7662685 6.69E-16 wgd
Cone19ag1117 Cone-Chr19:8027342 Cone8ag0740 Cone-Chr8:7457912 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1117 - - - 0.0