Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1126 ATGGTGGATAAACATTCCAACCTAAACGGAGCTTACTACGGCCCGTCGATCCCACCGCCGCATAGCAACTATCACCGCCCAAGCCGCGGCGGAGGCGGATGCGGCTGCCTCGGATGCCTCGTCAACTGCTGCTGCAACTGTATCTTCAACCTCATTGTCAAACTGATCATCACCGTCCTAGTCATCGTCGGCATCCTCGTCCTCATCTTCTGGCTCCTCTTCCGACCTAACGCGCTCAAGTTTCACGTCACCGACGCGTCGCTCACGCAATTCAACTTCTCCTCAACGAACAACAACCTGAATTACAATCTTGCCCTCAACATCTCCGCAAGAAACCCCAACAAGCGGATCGGAATCTACTACGACACGATCGAGGCCAACGCTTATTACGAAGATTTGCGGTTCAGTACGGTGAATCTAACGCGGTTTTATCAGGGCCACAAGAACACGAGCGTTTTGACGCCCAAGTTTTCTGGACAGCAGTTGCTTCCTTTGGGATCCGACGGCGTTTCGAAGTTTGATTCGGAGAAGAGCGATGAAACTTATAGCATTACCGTGAAACTGAATTTCAGGGTTAGATTTAGGATGGGCTGGATTAAGGTTGGGAAATTTAAGCCCAACGTGAAGTGCGATTTGAAGGTTCCGTTGAGCTCTAACGGAAGTTCCAACACGGCCTTTGAGACTACTAAGTGCGACTACGATTTCTGA 708 50.42 MVDKHSNLNGAYYGPSIPPPHSNYHRPSRGGGGCGCLGCLVNCCCNCIFNLIVKLIITVLVIVGILVLIFWLLFRPNALKFHVTDASLTQFNFSSTNNNLNYNLALNISARNPNKRIGIYYDTIEANAYYEDLRFSTVNLTRFYQGHKNTSVLTPKFSGQQLLPLGSDGVSKFDSEKSDETYSITVKLNFRVRFRMGWIKVGKFKPNVKCDLKVPLSSNGSSNTAFETTKCDYDF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8076803 8078475 + Conep19aG0116000.1 Cone19ag1126 459563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1126 235 Pfam Late embryogenesis abundant protein 108 210 IPR004864 -
Cone19ag1126 235 PANTHER OS05G0367900 PROTEIN 53 232 IPR044839 GO:0009506(PANTHER)|GO:0046658(PANTHER)|GO:0098542(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1126 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0130 Cone-Chr10:654919 Cone19ag1126 Cone-Chr19:8076803 9.62E-12 dispersed
Cone19ag1126 Cone-Chr19:8076803 Cone5ag1411 Cone-Chr5:8823866 8.47E-17 dispersed
Cone19ag1125 Cone-Chr19:8074136 Cone19ag1126 Cone-Chr19:8076803 2.24E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000695 3 4 2 1 2 4 2 4 4 3 3 4 4 4 4 4 4 1 2 4 4 3 4 3 4 4 3 6 3 0 97