Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag1137 | ATGTCCATAAACCACATCTCTTCAGACGTTTGGACTCAACGCTACAACTACCCAACCACCGCCATGGAATCTCACCACCATTCTTCAAAACAAACAGCCTCCGACCATCCCTTCCACCATGGCCACCACCGCCCAACCACCACCTTCTCTGTCAACCTTAACAACCATGACGTCGACGAAGAAGATCAAGAAGAACTCGACGAGCAATCAGAAGACGAACCACAACTACTTTTCCTAAACCACCTAAAAGAACCCATGTTCGAAAAGCCATTAACGCCTAGTGACGTCGGCAAACTGAACCGCCTCGTCATACCAAAACAACACGCCGAGAGATACTTCCCGCTCGCCGGTGGAAGCGGAGGCGGAGGGGGAGGTGAGTCGCCGAACGACAAGGGGTTTCTATTGAGTTTCGAGGATGAGTTGGGAAAGTGTTGGCGGTTCCGGTACTCGTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGTTACGTGAAAGAGAAGCGCCTCGATGCGGGCGACGTAGTTTTCTTCGAACGACACCGTACTGAATGTGACAGGTTATTCATAGGTTGTCGGCGGCGCTGTTTGCCTTCTGCTTCTTCTACTGCTGCAAATGCTGCTGCTGGAGGGTTGGCGCATGATACCACTGGTAGCAGTAGTACCAGTGCCATAATACTAACGCAGAATAGTAATAGCAATTATAGTAGTAGTAGCGAAAGTAGAGGGTGGACCAGGGGTCTCAATTCTGCGCATCATCCTTATCCTGCACACAGTCCTCATCATCAACCAGACTGTCTTCATGCACCAGGGTATCAAGGTCAAGAGGGACAAATAATGGGGGCAGGAAACTCAAAGATACTGAGGCTATTTGGAGTGAACATGGAGTGCCAGATGGATGAGCTGGTATCATCCGAGCCATCGACACCGATCGGTTCGTCTTTAACGAGCCAGGGTTCGGTCCACCCGAGTCACTTCTATACTCACATGAACTATTCTTCAAATTCTACTAATCACATGGATTTCACTTTCTGTGGAGACGTCAGCCAGATGAGAAATCGTGGAAGATGA | 1080 | 49.63 | MSINHISSDVWTQRYNYPTTAMESHHHSSKQTASDHPFHHGHHRPTTTFSVNLNNHDVDEEDQEELDEQSEDEPQLLFLNHLKEPMFEKPLTPSDVGKLNRLVIPKQHAERYFPLAGGSGGGGGGESPNDKGFLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVFFERHRTECDRLFIGCRRRCLPSASSTAANAAAGGLAHDTTGSSSTSAIILTQNSNSNYSSSSESRGWTRGLNSAHHPYPAHSPHHQPDCLHAPGYQGQEGQIMGAGNSKILRLFGVNMECQMDELVSSEPSTPIGSSLTSQGSVHPSHFYTHMNYSSNSTNHMDFTFCGDVSQMRNRGR | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8128818 | 8130716 | + | Conep19aG0117100.1 | Cone19ag1137 | 459574 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag1137 | 359 | MobiDBLite | consensus disorder prediction | 235 | 275 | - | - | |
| Cone19ag1137 | 359 | Gene3D | - | 81 | 201 | IPR015300 | - | |
| Cone19ag1137 | 359 | Pfam | B3 DNA binding domain | 87 | 198 | IPR003340 | GO:0003677(InterPro) | |
| Cone19ag1137 | 359 | SUPERFAMILY | DNA-binding pseudobarrel domain | 84 | 199 | IPR015300 | - | |
| Cone19ag1137 | 359 | ProSiteProfiles | B3 DNA-binding domain profile. | 87 | 199 | IPR003340 | GO:0003677(InterPro) | |
| Cone19ag1137 | 359 | SMART | B3_2 | 87 | 198 | IPR003340 | GO:0003677(InterPro) | |
| Cone19ag1137 | 359 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 27 | 298 | IPR044800 | GO:0003700(InterPro) | |
| Cone19ag1137 | 359 | MobiDBLite | consensus disorder prediction | 235 | 249 | - | - | |
| Cone19ag1137 | 359 | CDD | B3_DNA | 85 | 188 | IPR003340 | GO:0003677(InterPro) | |
| Cone19ag1137 | 359 | MobiDBLite | consensus disorder prediction | 22 | 52 | - | - | |
| Cone19ag1137 | 359 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag1137 | Cone-Chr19:8128818 | Cone9ag0480 | Cone-Chr9:2293951 | 7.06E-38 | dispersed | |
| Cone13ag1158 | Cone-Chr13:9115197 | Cone19ag1137 | Cone-Chr19:8128818 | 1.63E-188 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45359 | PF01569 | PAP2 | 1.60E-25 | CL0525 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag1137 | K09287 | - | vvi:100245964 | 300.056 |