Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cone19ag1137	ATGTCCATAAACCACATCTCTTCAGACGTTTGGACTCAACGCTACAACTACCCAACCACCGCCATGGAATCTCACCACCATTCTTCAAAACAAACAGCCTCCGACCATCCCTTCCACCATGGCCACCACCGCCCAACCACCACCTTCTCTGTCAACCTTAACAACCATGACGTCGACGAAGAAGATCAAGAAGAACTCGACGAGCAATCAGAAGACGAACCACAACTACTTTTCCTAAACCACCTAAAAGAACCCATGTTCGAAAAGCCATTAACGCCTAGTGACGTCGGCAAACTGAACCGCCTCGTCATACCAAAACAACACGCCGAGAGATACTTCCCGCTCGCCGGTGGAAGCGGAGGCGGAGGGGGAGGTGAGTCGCCGAACGACAAGGGGTTTCTATTGAGTTTCGAGGATGAGTTGGGAAAGTGTTGGCGGTTCCGGTACTCGTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCGTTACGTGAAAGAGAAGCGCCTCGATGCGGGCGACGTAGTTTTCTTCGAACGACACCGTACTGAATGTGACAGGTTATTCATAGGTTGTCGGCGGCGCTGTTTGCCTTCTGCTTCTTCTACTGCTGCAAATGCTGCTGCTGGAGGGTTGGCGCATGATACCACTGGTAGCAGTAGTACCAGTGCCATAATACTAACGCAGAATAGTAATAGCAATTATAGTAGTAGTAGCGAAAGTAGAGGGTGGACCAGGGGTCTCAATTCTGCGCATCATCCTTATCCTGCACACAGTCCTCATCATCAACCAGACTGTCTTCATGCACCAGGGTATCAAGGTCAAGAGGGACAAATAATGGGGGCAGGAAACTCAAAGATACTGAGGCTATTTGGAGTGAACATGGAGTGCCAGATGGATGAGCTGGTATCATCCGAGCCATCGACACCGATCGGTTCGTCTTTAACGAGCCAGGGTTCGGTCCACCCGAGTCACTTCTATACTCACATGAACTATTCTTCAAATTCTACTAATCACATGGATTTCACTTTCTGTGGAGACGTCAGCCAGATGAGAAATCGTGGAAGATGA	1080	49.63	MSINHISSDVWTQRYNYPTTAMESHHHSSKQTASDHPFHHGHHRPTTTFSVNLNNHDVDEEDQEELDEQSEDEPQLLFLNHLKEPMFEKPLTPSDVGKLNRLVIPKQHAERYFPLAGGSGGGGGGESPNDKGFLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVFFERHRTECDRLFIGCRRRCLPSASSTAANAAAGGLAHDTTGSSSTSAIILTQNSNSNYSSSSESRGWTRGLNSAHHPYPAHSPHHQPDCLHAPGYQGQEGQIMGAGNSKILRLFGVNMECQMDELVSSEPSTPIGSSLTSQGSVHPSHFYTHMNYSSNSTNHMDFTFCGDVSQMRNRGR	359

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
19	8128818	8130716	+	Conep19aG0117100.1	Cone19ag1137	459574

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cone19ag1137	359	MobiDBLite	consensus disorder prediction	235	275	-	-
Cone19ag1137	359	Gene3D	-	81	201	IPR015300	-
Cone19ag1137	359	Pfam	B3 DNA binding domain	87	198	IPR003340	GO:0003677(InterPro)
Cone19ag1137	359	SUPERFAMILY	DNA-binding pseudobarrel domain	84	199	IPR015300	-
Cone19ag1137	359	ProSiteProfiles	B3 DNA-binding domain profile.	87	199	IPR003340	GO:0003677(InterPro)
Cone19ag1137	359	SMART	B3_2	87	198	IPR003340	GO:0003677(InterPro)
Cone19ag1137	359	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	27	298	IPR044800	GO:0003700(InterPro)
Cone19ag1137	359	MobiDBLite	consensus disorder prediction	235	249	-	-
Cone19ag1137	359	CDD	B3_DNA	85	188	IPR003340	GO:0003677(InterPro)
Cone19ag1137	359	MobiDBLite	consensus disorder prediction	22	52	-	-
Cone19ag1137	359	MobiDBLite	consensus disorder prediction	28	42	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cone19ag1137	K09287	-	-	vvi:100245964	300.056

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cone19ag1137	Cone-Chr19:8128818	Cone9ag0480	Cone-Chr9:2293951	7.06E-38	dispersed
	Cone13ag1158	Cone-Chr13:9115197	Cone19ag1137	Cone-Chr19:8128818	1.63E-188	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi8g941	.	.	.	.	Bpe04g01510	.	Bma04g01562	Bma10g00112	.	Cmo14g00327	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone13ag1158	Cone19ag1137	.	.	.	Cme04g02367	.	Blo09g00482	Bda03g01650	Bda05g01144	.	.	.	.	.	.	.	.	Cma14g00333	.	Car14g00304	Cpe03g00288	.	Bhi11g02352	.	.	.	.	.	.	Cla10g01776	Cam10g1832	Cec10g1886	Cco10g1857	Clacu10g1846	Cmu10g2596	Cre10g1985	Lsi03g01863	Csa03g03451	Chy04g01900	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cone19ag1137	.	83	205	RAV Transcription Factor Family	AT2G36080	73.2	3.6e-45	178.7
Cone13ag1158	.	83	198	RAV Transcription Factor Family	AT2G36080	74.1	3.1e-44	175.6
Cone14ag0476	.	119	247	RAV Transcription Factor Family	AT2G36080	62.9	1.0e-39	160.6
Cone14ag0476	.	119	364	RAV Transcription Factor Family	AT2G46870	54.2	1.0e-58	224.6
Cone13ag0853	.	188	317	RAV Transcription Factor Family	AT2G46870	63.8	1.4e-39	161.0
Cone19ag0854	.	185	311	RAV Transcription Factor Family	AT2G46870	63.0	1.2e-38	157.9
Cone9ag0480	.	205	319	RAV Transcription Factor Family	AT2G46870	65.3	1.0e-37	154.8
Cone6ag0468	.	205	316	RAV Transcription Factor Family	AT2G46870	65.2	2.9e-37	153.3
Cone19ag1137	.	83	198	RAV Transcription Factor Family	AT2G46870	64.7	6.5e-37	152.1
Cone19ag1137	.	83	208	RAV Transcription Factor Family	AT3G11580	72.7	2.4e-44	176.4
Cone13ag1158	.	83	215	RAV Transcription Factor Family	AT3G11580	68.3	7.6e-43	171.4
Cone14ag0476	.	119	269	RAV Transcription Factor Family	AT3G11580	54.0	1.9e-41	166.8
Cone14ag0476	.	108	364	RAV Transcription Factor Family	AT3G61970	50.2	1.0e-55	214.5
Cone13ag0853	.	186	316	RAV Transcription Factor Family	AT3G61970	62.6	1.9e-38	157.1
Cone19ag1137	.	83	198	RAV Transcription Factor Family	AT3G61970	63.8	1.3e-37	154.5
Cone13ag1158	.	83	198	RAV Transcription Factor Family	AT3G61970	62.9	2.1e-37	153.7
Cone6ag0468	.	201	316	RAV Transcription Factor Family	AT3G61970	64.7	6.2e-37	152.1
Cone19ag0854	.	183	311	RAV Transcription Factor Family	AT3G61970	60.5	1.8e-36	150.6
Cone9ag0480	.	201	319	RAV Transcription Factor Family	AT3G61970	62.2	2.4e-36	150.2
Cone13ag1158	.	82	308	RAV Transcription Factor Family	AT5G06250	50.7	1.2e-47	187.6
Cone9ag0480	.	205	332	RAV Transcription Factor Family	AT5G06250	61.5	9.5e-37	151.4
Cone5ag1280	.	52	312	RAV Transcription Factor Family	AT1G50680	61.4	3.0e-80	296.2
Cone1ag0418	.	48	368	RAV Transcription Factor Family	AT1G50680	52.1	5.3e-77	285.4
Cone5ag1280	.	52	311	RAV Transcription Factor Family	AT1G51120	60.2	6.3e-81	298.5
Cone1ag0418	.	48	368	RAV Transcription Factor Family	AT1G51120	52.0	2.5e-77	286.6
Cone13ag0853	.	4	364	RAV Transcription Factor Family	AT1G13260	61.4	5.0e-107	385.2
Cone19ag0854	.	4	362	RAV Transcription Factor Family	AT1G13260	61.7	4.3e-106	382.1
Cone9ag0480	.	1	374	RAV Transcription Factor Family	AT1G13260	58.7	9.8e-103	370.9
Cone6ag0468	.	1	367	RAV Transcription Factor Family	AT1G13260	58.9	1.3e-102	370.5
Cone14ag0476	.	112	228	RAV Transcription Factor Family	AT1G13260	66.9	2.9e-38	156.8
Cone9ag0480	.	18	372	RAV Transcription Factor Family	AT3G25730	57.7	1.7e-96	350.1
Cone19ag0854	.	1	326	RAV Transcription Factor Family	AT3G25730	60.3	1.9e-95	346.7
Cone6ag0468	.	32	336	RAV Transcription Factor Family	AT3G25730	63.0	3.3e-95	345.9
Cone13ag0853	.	1	328	RAV Transcription Factor Family	AT3G25730	60.6	2.1e-94	343.2
Cone19ag0854	.	4	363	RAV Transcription Factor Family	AT1G68840	59.5	7.0e-104	374.8
Cone6ag0468	.	1	368	RAV Transcription Factor Family	AT1G68840	57.9	9.1e-104	374.4
Cone13ag0853	.	4	365	RAV Transcription Factor Family	AT1G68840	57.6	1.0e-102	370.9
Cone9ag0480	.	1	375	RAV Transcription Factor Family	AT1G68840	57.4	2.2e-102	369.8
Cone14ag0476	.	120	242	RAV Transcription Factor Family	AT1G68840	64.8	6.0e-39	159.1
Cone9ag0480	.	18	372	RAV Transcription Factor Family	AT3G25730	57.7	1.7e-96	350.1
Cone19ag0854	.	1	326	RAV Transcription Factor Family	AT3G25730	60.3	1.9e-95	346.7
Cone6ag0468	.	32	336	RAV Transcription Factor Family	AT3G25730	63.0	3.3e-95	345.9
Cone13ag0853	.	1	328	RAV Transcription Factor Family	AT3G25730	60.6	2.1e-94	343.2
Cone5ag1280	.	52	311	RAV Transcription Factor Family	AT1G51120	60.2	6.3e-81	298.5
Cone1ag0418	.	48	368	RAV Transcription Factor Family	AT1G51120	52.0	2.5e-77	286.6
Cone19ag1137	.	83	208	RAV Transcription Factor Family	AT3G11580	72.7	2.4e-44	176.4
Cone13ag1158	.	83	215	RAV Transcription Factor Family	AT3G11580	68.3	7.6e-43	171.4
Cone14ag0476	.	119	269	RAV Transcription Factor Family	AT3G11580	54.0	1.9e-41	166.8
Cone19ag1137	.	83	205	RAV Transcription Factor Family	AT2G36080	73.2	3.6e-45	178.7
Cone13ag1158	.	83	198	RAV Transcription Factor Family	AT2G36080	74.1	3.1e-44	175.6
Cone14ag0476	.	119	247	RAV Transcription Factor Family	AT2G36080	62.9	1.0e-39	160.6
Cone13ag1158	.	82	308	RAV Transcription Factor Family	AT5G06250	50.7	1.2e-47	187.6
Cone9ag0480	.	205	332	RAV Transcription Factor Family	AT5G06250	61.5	9.5e-37	151.4
Cone14ag0476	.	119	364	RAV Transcription Factor Family	AT2G46870	54.2	1.0e-58	224.6
Cone13ag0853	.	188	317	RAV Transcription Factor Family	AT2G46870	63.8	1.4e-39	161.0
Cone19ag0854	.	185	311	RAV Transcription Factor Family	AT2G46870	63.0	1.2e-38	157.9
Cone9ag0480	.	205	319	RAV Transcription Factor Family	AT2G46870	65.3	1.0e-37	154.8
Cone6ag0468	.	205	316	RAV Transcription Factor Family	AT2G46870	65.2	2.9e-37	153.3
Cone19ag1137	.	83	198	RAV Transcription Factor Family	AT2G46870	64.7	6.5e-37	152.1
Cone5ag1280	.	52	312	RAV Transcription Factor Family	AT1G50680	61.4	3.0e-80	296.2
Cone1ag0418	.	48	368	RAV Transcription Factor Family	AT1G50680	52.1	5.3e-77	285.4
Cone14ag0476	.	108	364	RAV Transcription Factor Family	AT3G61970	50.2	1.0e-55	214.5
Cone13ag0853	.	186	316	RAV Transcription Factor Family	AT3G61970	62.6	1.9e-38	157.1
Cone19ag1137	.	83	198	RAV Transcription Factor Family	AT3G61970	63.8	1.3e-37	154.5
Cone13ag1158	.	83	198	RAV Transcription Factor Family	AT3G61970	62.9	2.1e-37	153.7
Cone6ag0468	.	201	316	RAV Transcription Factor Family	AT3G61970	64.7	6.2e-37	152.1
Cone19ag0854	.	183	311	RAV Transcription Factor Family	AT3G61970	60.5	1.8e-36	150.6
Cone9ag0480	.	201	319	RAV Transcription Factor Family	AT3G61970	62.2	2.4e-36	150.2
Cone13ag0853	.	4	364	RAV Transcription Factor Family	AT1G13260	61.4	5.0e-107	385.2
Cone19ag0854	.	4	362	RAV Transcription Factor Family	AT1G13260	61.7	4.3e-106	382.1
Cone9ag0480	.	1	374	RAV Transcription Factor Family	AT1G13260	58.7	9.8e-103	370.9
Cone6ag0468	.	1	367	RAV Transcription Factor Family	AT1G13260	58.9	1.3e-102	370.5
Cone14ag0476	.	112	228	RAV Transcription Factor Family	AT1G13260	66.9	2.9e-38	156.8
Cone19ag0854	.	4	363	RAV Transcription Factor Family	AT1G68840	59.5	7.0e-104	374.8
Cone6ag0468	.	1	368	RAV Transcription Factor Family	AT1G68840	57.9	9.1e-104	374.4
Cone13ag0853	.	4	365	RAV Transcription Factor Family	AT1G68840	57.6	1.0e-102	370.9
Cone9ag0480	.	1	375	RAV Transcription Factor Family	AT1G68840	57.4	2.2e-102	369.8
Cone14ag0476	.	120	242	RAV Transcription Factor Family	AT1G68840	64.8	6.0e-39	159.1

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0006170	2	2	1	2	1	1	2	1	1	1	1	1	2	1	1	2	1	2	2	1	1	1	1	1	1	1	1	1	1	1	38

Regulatory proteins

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	45359	PF01569	PAP2	1.60E-25	CL0525	Cone	TF