Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1184 ATGGGTTCTTTGTCTGGTACTTGTGATATTGTTGAAGCAAGAAAAGAGAAGGATCCAATTCAATATTCCAAGGGATCTTATCGACCAAATTTCAGATCTAGTGAGAAAAGCCCGAGACTTCCTCCACTAAAGGTCAGATACAATCATTCTTTAGATAAAGAAATCAATCAGCTTTTGGAGGCAGTTAGTCTTAAAGGTACACCAAAGAATACGGGTCTTTCACACGTAGGCACAGGACCATTACAGAAAAATGCGTTAAAGAAGCCAATTACCATTACAACTCGCCGTTCTCCAGAAATTGGATTTTCTGAGCCAGCTAGTCTGAAGGAAACTTTAAGGGATGTATGTGTTTCAAAGGCATCAGGAGTGGCTGCCATGAGAAGACTAACACAATCAGCCGACTTTTCAGGAGCCTCCGAAGCTGGACGGATTAAGTCATTGTACAATTCAGTCGTAGTTGAATCCAATCAGTCTGGCCTTGGCATCAATGACAGTAAAGGAAGCACGGTTAAAATATCCTTTGTGCCTAAGGATAGAAAGCCAAACTCTTCTCCAAAAACGCCCGAGCATATTCGTGTACCCAAGGTCAAGTCATTGAGCAAAAGTGCACATTCTTCTCCTCGATTATCTGCTTTCACAACACCAAACAGTACTAAGACTACACTGCTGAAGTACGAGATTGCATCTGATTCACGGAAAATTGGGATTCAAAAGTCAAAGAAAGAAATTGCAAGGAAAGATAGGAATGGATCTGCTTCTTCTCATTCTAATACTGTTGACAATATGCTTGATGGAAATGAAAATATTCCCTCCTCAACCAAAATGGCAAACAAAGTGAAATCATCAAGTCCCGGGTATAACGGCAGGTTGCTAAGAGTGTCGCCATCTGACTCCATTGATGGAAATAAATCAAGCAAGTCTTCCCGGAAAGTCAAACCTAAGGATGTTGATACCAAGGTACAACCGGACTTGAGTACGCTAGATGCAGGTATCAATGCCAGTGGTGTTAGTAAGAGCCAGCTCTTATGTGAGAGATGCCACTGCACTTTGAAGACTATGAATAAGGAATCCCGAACAAATTCTCTGGTCTCCATTTGTACAAGTCTTGCCACTGAATTAAACTCAAGTAATGCAACTTCTAGTACACTCAAACAAAGCATCGCCTTGGATAGCAGCAATAGAAGTGAAGCACCTTCTTCATTAAATAGTAGTAGCCATGGTGGATATAGTACTAGTACAGCAAGTTTTAGTTATGAGAACAATGTAAGGAGATCCAGTTGTAGCACCCGGCCCCACATGTCGAAGGATCTTAAATGGGGAGCCATTCGTCATATTCGACAGCAAGGAACCTTTGGTCTGAAACACTTCAAAATTTTGAAGAAGCTTGGTGCTGGAGACATTGGAGATGTTTATCTTGCCAAGCTTATCAGTACAAATTGCTTGTTTGCCTTAAAGGTTATGGACAATGAGTTCTTAGAAAGAAGGCAGAAGATGCCAAGAGTCCAAACTGAAAGGAAAGTACTGAAAATGCTCGATCATCCATTTCTGCCAACACTTTATGCACATTTTACATCAGACAATCTGTCATGTCTGGTCATGGACTATTGTTCTGGTGGAGATCTTCATGTTCTTCGCCAGAAACAGCCTGGCAGGACTTTTTCCGAATCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTTCTTGCTATAGAGTATTTGCACATGCTAGGTGTTATTTATCGAGATTTGAAACCTGAAAATGTTCTTGTCAGAGAAGATGGCCATATTATGCTTACAGATTTCGATCTCTCACTGAGGTGCTCAGTCAATCCAACTCTCTTAAAATCTTCTTCTACAAAACCCGACCCTATAAAGCTGTCCAGACAGTACACTGAATCCAGTAATTCAGTTGATCCCTTTTGCATGGTTCCATCCTGTCAAGTCTCGTGCTTTAGTCCTCGGTTCTTACCCAACACTGCTAAAACAAGGAAGTTAAAACCCGACCCATCTATTCAAGCACGATCATTGCCGCAACTTATCGTGGAGCCTACTGACGCAAGATCAAACTCCTTTGTTGGGACCCACGAGTACTTAGCCCCCGAGATCATCCAAGGGGAGGGCCATGGGGCGGCGGTTGATTGGTGGACACTTGGAGTCTTTCTATACGAGCTTTTATATGGTAGAACCCCGTTTCGAGGTTCCAATAATGAAGAGACATTGGCTAATGTGGTTCTGCAGAGGCTTGATTTTCCGGATAGTCTGCCAGTTAGTTCTAGGGGAAGGGATCTTATTCGAAGATTACTGGTCAAAGAGGCTAAGAATCGGTTTGGATCGGAGAAAGGAGCTGCTGAGATTAAGCAGCACCCATTCTTTCATGGTCTTAACTGGGCATTAATTCGATGTGCTAGTCCACCGGAACTTCCAGAGTTGTTTGATTATGATGTTTCAGACACTGATGTTCAGGAAGAAAACAGGTATCTGGAGTGTAAGGCTAAAGGAGACCACTTGGAGTTTGAGTTGTTCTAG 2523 42.37 MGSLSGTCDIVEARKEKDPIQYSKGSYRPNFRSSEKSPRLPPLKVRYNHSLDKEINQLLEAVSLKGTPKNTGLSHVGTGPLQKNALKKPITITTRRSPEIGFSEPASLKETLRDVCVSKASGVAAMRRLTQSADFSGASEAGRIKSLYNSVVVESNQSGLGINDSKGSTVKISFVPKDRKPNSSPKTPEHIRVPKVKSLSKSAHSSPRLSAFTTPNSTKTTLLKYEIASDSRKIGIQKSKKEIARKDRNGSASSHSNTVDNMLDGNENIPSSTKMANKVKSSSPGYNGRLLRVSPSDSIDGNKSSKSSRKVKPKDVDTKVQPDLSTLDAGINASGVSKSQLLCERCHCTLKTMNKESRTNSLVSICTSLATELNSSNATSSTLKQSIALDSSNRSEAPSSLNSSSHGGYSTSTASFSYENNVRRSSCSTRPHMSKDLKWGAIRHIRQQGTFGLKHFKILKKLGAGDIGDVYLAKLISTNCLFALKVMDNEFLERRQKMPRVQTERKVLKMLDHPFLPTLYAHFTSDNLSCLVMDYCSGGDLHVLRQKQPGRTFSESAARFYVAEVLLAIEYLHMLGVIYRDLKPENVLVREDGHIMLTDFDLSLRCSVNPTLLKSSSTKPDPIKLSRQYTESSNSVDPFCMVPSCQVSCFSPRFLPNTAKTRKLKPDPSIQARSLPQLIVEPTDARSNSFVGTHEYLAPEIIQGEGHGAAVDWWTLGVFLYELLYGRTPFRGSNNEETLANVVLQRLDFPDSLPVSSRGRDLIRRLLVKEAKNRFGSEKGAAEIKQHPFFHGLNWALIRCASPPELPELFDYDVSDTDVQEENRYLECKAKGDHLEFELF 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8299360 8302709 + Conep19aG0121900.1 Cone19ag1184 459621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1184 840 ProSiteProfiles Protein kinase domain profile. 456 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1184 840 MobiDBLite consensus disorder prediction 175 215 - -
Cone19ag1184 840 SUPERFAMILY Protein kinase-like (PK-like) 439 818 IPR011009 -
Cone19ag1184 840 FunFam serine/threonine-protein kinase D6PK-like 540 607 - -
Cone19ag1184 840 MobiDBLite consensus disorder prediction 250 289 - -
Cone19ag1184 840 Gene3D Phosphorylase Kinase; domain 1 454 535 - -
Cone19ag1184 840 SMART serkin_6 456 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1184 840 MobiDBLite consensus disorder prediction 303 321 - -
Cone19ag1184 840 Gene3D Phosphorylase Kinase; domain 1 809 818 - -
Cone19ag1184 840 CDD STKc_phototropin_like 454 809 - -
Cone19ag1184 840 Gene3D Transferase(Phosphotransferase) domain 1 685 808 - -
Cone19ag1184 840 MobiDBLite consensus disorder prediction 1 43 - -
Cone19ag1184 840 Gene3D Transferase(Phosphotransferase) domain 1 536 605 - -
Cone19ag1184 840 Pfam Protein kinase domain 687 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1184 840 Pfam Protein kinase domain 457 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1184 840 FunFam serine/threonine-protein kinase D6PK-like 685 808 - -
Cone19ag1184 840 MobiDBLite consensus disorder prediction 389 411 - -
Cone19ag1184 840 MobiDBLite consensus disorder prediction 182 196 - -
Cone19ag1184 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1184 840 MobiDBLite consensus disorder prediction 238 321 - -
Cone19ag1184 840 MobiDBLite consensus disorder prediction 199 215 - -
Cone19ag1184 840 PANTHER FLIPPASE KINASE 1-RELATED 289 813 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1184 Cone-Chr19:8299360 Cone3ag0209 Cone-Chr3:1113014 8.99E-293 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone19ag1184 Cone-Chr19:8299360 3.42E-125 wgd
Cone10ag0177 Cone-Chr10:861393 Cone19ag1184 Cone-Chr19:8299360 9.34E-290 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone19ag1184 Cone-Chr19:8299360 8.88E-199 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone19ag1184 Cone-Chr19:8299360 0 wgd
Cone18ag0217 Cone-Chr18:1076442 Cone19ag1184 Cone-Chr19:8299360 3.54E-201 wgd
Cone19ag1184 Cone-Chr19:8299360 Cone2ag0168 Cone-Chr2:895285 3.78E-151 wgd
Cone19ag1184 Cone-Chr19:8299360 Cone5ag1353 Cone-Chr5:8149607 6.13E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82410 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1184 - - - 0.0