Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1192 ATGCAGTATGGTACTTCACAATCTACTACAAATCAAACCAATTGGGGTAGTACTAGTAGTAAGAACAAATTAGTTAATAATATTAGTTCCGGTGGTTACCCAGTTTATCGGGGAGTAAGGCGCAGGAACACGGGAAAATGGGTGTCGGAAATTAGAGAACCAAAAAAGCCGAATAGGATTTGGTTGGGTACATTTGCTACACCGGAAATGGCAGCAATTGCTTATGATGTAGCGGCACGTGCCCTCAAGGGTCCAGATGCCGAGCTTAATTTCCCAAACCTGGCCTCTTCTTTCCCCGTTCCGGCTTCTAACTCTCCACCTGATATCCAAGTGGCGGCGGCATCTGCGGCGGCTGCATTGGGGGCGGCAGCGGCGGCCATGGAGGAGGTGAAAGGTGTTGGAAAATCATTAGGGAACGGTCATCTCGAGGATAATTTTGATGGTGGGAAAGAAAAGGAAATGGATGGGGGAAATATTGTTAGGGAAGATATGGTTTATACTGATTATGATCTTCAATTCGTTGATGAGGATATGATATTCGATATGCCTAATGTTTTGATGGATATGGCAAACGGCATGCTTCTTAGCCCTCCTCGCTTGGACAACGTCGGTGCAACGGAAGCAGCCGACGAAAATACCGTGGATCATCAGACAACCCTTTGGAAATTTCTCTAG 675 46.37 MQYGTSQSTTNQTNWGSTSSKNKLVNNISSGGYPVYRGVRRRNTGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAARALKGPDAELNFPNLASSFPVPASNSPPDIQVAAASAAAALGAAAAAMEEVKGVGKSLGNGHLEDNFDGGKEKEMDGGNIVREDMVYTDYDLQFVDEDMIFDMPNVLMDMANGMLLSPPRLDNVGATEAADENTVDHQTTLWKFL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8341322 8341996 - Conep19aG0122700.1 Cone19ag1192 459629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1192 224 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 SMART rav1_2 35 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 FunFam Ethylene-responsive transcription factor 2 35 93 - -
Cone19ag1192 224 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 139 IPR051032 -
Cone19ag1192 224 CDD AP2 36 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677(InterPro)
Cone19ag1192 224 MobiDBLite consensus disorder prediction 1 23 - -
Cone19ag1192 224 Pfam AP2 domain 34 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag1192 224 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1192 Cone-Chr19:8341322 Cone3ag0206 Cone-Chr3:1091642 7.34E-54 dispersed
Cone13ag1205 Cone-Chr13:9320274 Cone19ag1192 Cone-Chr19:8341322 3.49E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45365 PF14144 DOG1 4.10E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1192 - - - 0.0