Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag1192 | ATGCAGTATGGTACTTCACAATCTACTACAAATCAAACCAATTGGGGTAGTACTAGTAGTAAGAACAAATTAGTTAATAATATTAGTTCCGGTGGTTACCCAGTTTATCGGGGAGTAAGGCGCAGGAACACGGGAAAATGGGTGTCGGAAATTAGAGAACCAAAAAAGCCGAATAGGATTTGGTTGGGTACATTTGCTACACCGGAAATGGCAGCAATTGCTTATGATGTAGCGGCACGTGCCCTCAAGGGTCCAGATGCCGAGCTTAATTTCCCAAACCTGGCCTCTTCTTTCCCCGTTCCGGCTTCTAACTCTCCACCTGATATCCAAGTGGCGGCGGCATCTGCGGCGGCTGCATTGGGGGCGGCAGCGGCGGCCATGGAGGAGGTGAAAGGTGTTGGAAAATCATTAGGGAACGGTCATCTCGAGGATAATTTTGATGGTGGGAAAGAAAAGGAAATGGATGGGGGAAATATTGTTAGGGAAGATATGGTTTATACTGATTATGATCTTCAATTCGTTGATGAGGATATGATATTCGATATGCCTAATGTTTTGATGGATATGGCAAACGGCATGCTTCTTAGCCCTCCTCGCTTGGACAACGTCGGTGCAACGGAAGCAGCCGACGAAAATACCGTGGATCATCAGACAACCCTTTGGAAATTTCTCTAG | 675 | 46.37 | MQYGTSQSTTNQTNWGSTSSKNKLVNNISSGGYPVYRGVRRRNTGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAARALKGPDAELNFPNLASSFPVPASNSPPDIQVAAASAAAALGAAAAAMEEVKGVGKSLGNGHLEDNFDGGKEKEMDGGNIVREDMVYTDYDLQFVDEDMIFDMPNVLMDMANGMLLSPPRLDNVGATEAADENTVDHQTTLWKFL | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8341322 | 8341996 | - | Conep19aG0122700.1 | Cone19ag1192 | 459629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag1192 | 224 | ProSiteProfiles | AP2/ERF domain profile. | 35 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | SMART | rav1_2 | 35 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | FunFam | Ethylene-responsive transcription factor 2 | 35 | 93 | - | - | |
Cone19ag1192 | 224 | Gene3D | AP2/ERF domain | 35 | 93 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 19 | 139 | IPR051032 | - | |
Cone19ag1192 | 224 | CDD | AP2 | 36 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | SUPERFAMILY | DNA-binding domain | 35 | 93 | IPR016177 | GO:0003677(InterPro) | |
Cone19ag1192 | 224 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cone19ag1192 | 224 | Pfam | AP2 domain | 34 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | PRINTS | Ethylene responsive element binding protein signature | 36 | 47 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone19ag1192 | 224 | PRINTS | Ethylene responsive element binding protein signature | 58 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag1192 | Cone-Chr19:8341322 | Cone3ag0206 | Cone-Chr3:1091642 | 7.34E-54 | dispersed | |
Cone13ag1205 | Cone-Chr13:9320274 | Cone19ag1192 | Cone-Chr19:8341322 | 3.49E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45365 | PF14144 | DOG1 | 4.10E-31 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag1192 | - | - | - | 0.0 |