Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1193 ATGGAAGATCATAATCATGGTGATCAGTATGGAATTACTGATCATCTGAGGCATCTGATAATGATCAACGGCGGAAAACCTCCGACAATTCCGCACTTGCAACCGCAAGAACTAGCACACCACCACCAGCACTACTGCAACGACTACGATTTGATGATGATGACGATGAATAGTAGTAGTAATTGTACAGCTGCCCGCGGTTTGGCTGGAATTCCTTCTAGTTCAGAGTTTCATTCTGGTGCTTCTACCTCCACTATATCTCCTCCTGCTCATCCTCCTCCTCCTCCCCCTCCCCCTCCTCCTGGGTTTGATCAGATGGAATATTCTGGAACAGGAAGATGGCCAAGAGAAGAGACGCTTACGCTCTTAGAGGTCAGATCTCGACTTGATTCCAAGTTTAAAGAGGCCAATCAAAAGGCACCCCTGTGGGATGAAGTATCTAGGATCATGTCCGAAGAACATGGGTATCAAAGAAATGGCAAAAAATGCAGAGAGAAGTTTGAAAATTTATACAAGTACTACAAGAAGTCGAAAGAAGGCAAATCTGGAAGACAAGATGGTAAACACTACAGATTCTTTCGTCAACTGGAAGCTCTCTACGGATCATCAGGCGAAACCAGCAGCAATATCAATAATCATCATCCCACTACTAATAATAGTATCCCTGTTAATATAGCACCTCAAACTGCAGTTTTCATTGAAAACAGCACGCCTCCAACTTCTACTGATTTGGAAAATACCTCTACTGAGATATCATTAGACTACAATTCTGGAGAAAAGATGGCGATGATGAGATCATCAAGGAATAATACAAGAAAAAGTAGCGGGAAAAAGAGCTGGAAAAAGAAGATAATGGAGTTCATCGATTCACAGATGAAGAAGATCATGGAGAAGCAGGAAGCTTGGATGGAGAAAGTAATGAAAACTATTGAACAGAAGGAAAAGGAGAGGACAGAAAGAGATTCAGAATGGAGGAAGCAAGAGATGGGCAGGATTGATAGAGAACATAGCTTTTGGGCTAAAGAGAGAGCATGGATCGAAGCGAGAGATGCCGCCTTAACTGAAACATTGCAGAACCTTAGTGGAAAATCAGGTCGCGATCTTAATCATGATCATGATGATCATGAGGGAAATTATTATAAGAATAGTACTACTAGTACTGGTCAAGGAGGATGTTATGGTGAAATTATAGAGCATGAAGAGCAATTAGAGAGAGTGAAGATAGAGCAGTTAATGTCTAATGGGTCTATTAATGACGGTGGCAATGTGGGCCAGGAGAGTACTACTACTAATTGTTTAAGATTGCTAGTGGACCATGATGATCAAAATCATCAGACATTGTGGGAAAATTATGGATTGAAGCTCAACAACATTGGCGATTAA 1383 41.43 MEDHNHGDQYGITDHLRHLIMINGGKPPTIPHLQPQELAHHHQHYCNDYDLMMMTMNSSSNCTAARGLAGIPSSSEFHSGASTSTISPPAHPPPPPPPPPPGFDQMEYSGTGRWPREETLTLLEVRSRLDSKFKEANQKAPLWDEVSRIMSEEHGYQRNGKKCREKFENLYKYYKKSKEGKSGRQDGKHYRFFRQLEALYGSSGETSSNINNHHPTTNNSIPVNIAPQTAVFIENSTPPTSTDLENTSTEISLDYNSGEKMAMMRSSRNNTRKSSGKKSWKKKIMEFIDSQMKKIMEKQEAWMEKVMKTIEQKEKERTERDSEWRKQEMGRIDREHSFWAKERAWIEARDAALTETLQNLSGKSGRDLNHDHDDHEGNYYKNSTTSTGQGGCYGEIIEHEEQLERVKIEQLMSNGSINDGGNVGQESTTTNCLRLLVDHDDQNHQTLWENYGLKLNNIGD 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8355133 8357537 + Conep19aG0122800.1 Cone19ag1193 459630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1193 460 FunFam trihelix transcription factor PTL-like 114 176 - -
Cone19ag1193 460 Pfam Myb/SANT-like DNA-binding domain 113 199 IPR044822 -
Cone19ag1193 460 Coils Coil 296 316 - -
Cone19ag1193 460 Gene3D - 114 176 - -
Cone19ag1193 460 PANTHER FI21293P1 90 366 - -
Cone19ag1193 460 CDD GT1 113 178 - -
Cone19ag1193 460 ProSiteProfiles Myb-like domain profile. 112 171 IPR001005 -
Cone19ag1193 460 MobiDBLite consensus disorder prediction 87 104 - -
Cone19ag1193 460 SUPERFAMILY Formin homology 2 domain (FH2 domain) 92 189 - -
Cone19ag1193 460 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1193 Cone-Chr19:8355133 Cone8ag0052 Cone-Chr8:272598 4.73E-31 dispersed
Cone10ag0183 Cone-Chr10:892437 Cone19ag1193 Cone-Chr19:8355133 9.95E-72 wgd
Cone13ag1208 Cone-Chr13:9331074 Cone19ag1193 Cone-Chr19:8355133 2.96E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45366 PF04515 Choline_transpo 5.60E-55 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1193 - - - 0.0