Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1198 ATGGAAATACCTGGCCCAAGATCGAACTACACGCTTCTAAGTCAGATTCCAGACGATCCGTTAGGCGGTGGAGTAGCAATTCAAGGAACGGGAGCTGCAACGTGTTACGAGTCATTGTCCGGGGAAGGAAAGAATAGTAAGGGAAAGGCGGAGAAAGGACTCGACTGGGAAGCTGGAGCTGATCACAAGGCAAATCAGCTCGGAAATCGGCTAGGAAACATGTACTCTTCGCTTCAGAGGCAATCGAGTGGAAGCAGCTTCGGCGAGAGCTCGCTTTCTGGTGAGTACTACGCGCCGACGCTGTCTACTGGTACGGTAAACGAGACCGATGCTTTTCCGTATGTGCATGACGATGGATTCAGAACCGGAGGTGAGTTGAGGGCTAAGGTGGTGGAGGGATTTATGGGAACAGGTGGATCGTCAGGGAAGAGTTGGGCGCAGCAAATGGAGGAGTGTTATCATTTGCAGTTAGCTTTAGCGCTTAGGCTTTCATCGGTGGCAACGTGTGCTGATGATCCTAATTTTTTGGATCCAGTGGCCGATGAGTCTTCCCTGAGGTCCTCTTCTAGCTCAGTTGAAGCAGTCTCACATCGATTTTGGGTGAATGGCTGCCTATCATACTCTGATAAAGTTCCGGATGGATTTTATCTGATTCATGGGTTGGATCCGTATGTATGGACTGTGTGCACTGATCGGCACGAGAATGATCGGATCCCGTCGATTGAATTACTAAAGTCTGTTGATCCTAGCATGGATTCTTCCATCGAATCTGTTTTTATTGATCGACATAGTGATTCCAACTTAAAGGAACTCCAAAATCGAGTTCACAGCATTTCTCGTGGCTGTATAACCATTGAAGAGGTTGTAGATCAGCTTGCAAAGCTTGTATGCAACCGCATGGGTGGCTCTGTTTCCAATGGAGAAGATGATTTAGCATCCATCTGGAGGGAATGCTGCGATGACCTAAAATATTGCTTAGGATCTGTTGTTGTTCCAATTGGAAGCCTATCTATTGGCCTATGCAGACATCGTGCCCTATTATTTAAAGTACTGGCTGACACAATTGATTTACCTTGTCGAATAGCGAAAGGTTGCAAGTATTGCACAAGAGATGATGCTTCTTCATGTCTTGTCCATTTCGGACTCGGCAGGGAGTACCTTGTGGATTTGATCGGAAATCCAGGTTGCCTCTGTGAACCTGATTCCTTACTCAATGGTCCGTCATCCATCTCAATCTCTTCGCCTTTGCGCTTTCCACGACTCAATACAGTTGAGCCGATTATTGACTTCAGGTCACTGGCCAAACAGTACTTCTCAGAATGTCAATCACTTAACATTGTATTTGATGAAGCTCCCGCAGGGAATGTATTTGTTGGAGAAGATGGTGTTGTTAAGAAGACCACTGAGAGTAATGACTTAATGCTTGTGTCGGGTGACGGTGATGAAAATTTTCGGTTACTGCACCCAAAAGCCTCTCATTCCAGTGCTAATGATAGCAATTCCCTGCCCCTTATGTCATTTGACGCTTCCCATAATCTTACACCCTCAGCTCCCATTGGAAAAGATTCAGTTCCCTTGAACCATTTCCCACAGATCACTCATAGAGTTCCACCACCTCGGACATTGTCTCATATTAGAGTGGATCCTGCTAGGGATTCGGGGTTTGTGGATGGAGAAATATCTCTTGACATAGAGGACTTGACAATTCCATGGAATGATCTTGTTATAAAAGAGAGAATTGGATCAGGTTCTTTTGGAATCGTTCATCGTGCTGATTGGCATGGCTCAGATGTTGCTGTGAAGATTCTCATGGAACAAGACTTCTTTGCTGAACGATTTAAAGAATTTCTGCGGGAGGTTGCGATAATGAAACGCCTACGGCATCCCAACATAGTTCTATTTATGGGGGCAGTCACTCGGCCCCCAAATTTGTCTATAGTAACAGAATATCTTTCAAGAGGTAGCTTATATATGCTTTTGCATAAACCAGGCGCCAAAGAGATGTTAGACGAGAAGCGTCGTTTAAATATGGCTTATGATGTGGCAAAAGGAATGAATTATCTTCATAGACGCAATCCTCCAATTGTTCATCGTGATTTAAAATCTCCAAACCTTTTGGTTGACAAAAAGTACACGGTGAAGGTTTGTGATTTTGGTCTCTCTCGCTTAAAGGCGAATACATTTCTTTCATCGAAGTCAGCAGCTGGGACTCCTGAATGGATGGCTCCAGAAGTTCTTTGTGATGAGCCATCTAATGAAAAGTCGGATGTTTACAGCTTTGGCGTAATTTTGTGGGAGCTTGCAACGCTGCAAAAGCCATGGGGTAATTTAAATCCAGCACAGGTTATCAATGCTGTTGGAATTATGTGCAAGAGACTTGAGATTCCGCGGGATTTGAATCCTAGAGTAGCTTCCTTAATAGAGGCTTGCTGGGCCAAGGAGCTGTGGAAACGCCCATCCTTTTCGAGTATAATGGAATCCTTGAGACCATTGATTAAACCCGGTACACCTCAACCGGGCAGTGAGGATTTGTCGTTAATTATGCTGTGA 2550 44.94 MEIPGPRSNYTLLSQIPDDPLGGGVAIQGTGAATCYESLSGEGKNSKGKAEKGLDWEAGADHKANQLGNRLGNMYSSLQRQSSGSSFGESSLSGEYYAPTLSTGTVNETDAFPYVHDDGFRTGGELRAKVVEGFMGTGGSSGKSWAQQMEECYHLQLALALRLSSVATCADDPNFLDPVADESSLRSSSSSVEAVSHRFWVNGCLSYSDKVPDGFYLIHGLDPYVWTVCTDRHENDRIPSIELLKSVDPSMDSSIESVFIDRHSDSNLKELQNRVHSISRGCITIEEVVDQLAKLVCNRMGGSVSNGEDDLASIWRECCDDLKYCLGSVVVPIGSLSIGLCRHRALLFKVLADTIDLPCRIAKGCKYCTRDDASSCLVHFGLGREYLVDLIGNPGCLCEPDSLLNGPSSISISSPLRFPRLNTVEPIIDFRSLAKQYFSECQSLNIVFDEAPAGNVFVGEDGVVKKTTESNDLMLVSGDGDENFRLLHPKASHSSANDSNSLPLMSFDASHNLTPSAPIGKDSVPLNHFPQITHRVPPPRTLSHIRVDPARDSGFVDGEISLDIEDLTIPWNDLVIKERIGSGSFGIVHRADWHGSDVAVKILMEQDFFAERFKEFLREVAIMKRLRHPNIVLFMGAVTRPPNLSIVTEYLSRGSLYMLLHKPGAKEMLDEKRRLNMAYDVAKGMNYLHRRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLCDEPSNEKSDVYSFGVILWELATLQKPWGNLNPAQVINAVGIMCKRLEIPRDLNPRVASLIEACWAKELWKRPSFSSIMESLRPLIKPGTPQPGSEDLSLIML 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8377949 8383186 - Conep19aG0123300.1 Cone19ag1198 459635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1198 849 FunFam Serine/threonine-protein kinase CTR1 653 838 - -
Cone19ag1198 849 FunFam Serine/threonine-protein kinase isoform 1 565 652 - -
Cone19ag1198 849 CDD STKc_MAP3K-like 580 828 - -
Cone19ag1198 849 ProSiteProfiles Protein kinase domain profile. 574 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PRINTS Tyrosine kinase catalytic domain signature 755 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PRINTS Tyrosine kinase catalytic domain signature 648 661 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PRINTS Tyrosine kinase catalytic domain signature 736 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PRINTS Tyrosine kinase catalytic domain signature 689 707 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PRINTS Tyrosine kinase catalytic domain signature 799 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 PANTHER SERINE-THREONINE PROTEIN KINASE 96 830 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone19ag1198 849 SUPERFAMILY Protein kinase-like (PK-like) 552 828 IPR011009 -
Cone19ag1198 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 Gene3D Transferase(Phosphotransferase) domain 1 653 838 - -
Cone19ag1198 849 ProSitePatterns Protein kinases ATP-binding region signature. 580 601 IPR017441 GO:0005524(InterPro)
Cone19ag1198 849 SMART serkin_6 574 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 Pfam Protein tyrosine and serine/threonine kinase 575 828 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1198 849 Gene3D Phosphorylase Kinase; domain 1 567 652 - -
Cone19ag1198 849 Pfam Ethylene-responsive protein kinase Le-CTR1 192 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1198 Cone-Chr19:8377949 Cone7ag0865 Cone-Chr7:6610121 6.02E-195 dispersed
Cone10ag0186 Cone-Chr10:905888 Cone19ag1198 Cone-Chr19:8377949 0 wgd
Cone13ag1213 Cone-Chr13:9357152 Cone19ag1198 Cone-Chr19:8377949 0 wgd
Cone19ag1198 Cone-Chr19:8377949 Cone3ag0203 Cone-Chr3:1052705 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82411 PF01501 Glyco_transf_8 3.20E-43 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1198 K14510 - mdm:103449391 1147.5